Pcer036014.1
Basic Information
- Insect
- Polydrusus cervinus
- Gene Symbol
- -
- Assembly
- GCA_935413225.1
- Location
- CAKXYS010001160.1:758-2011[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.48 50 5.9 2.6 2 23 78 99 77 99 0.96 2 11 0.058 5.9 8.8 0.3 1 23 122 144 122 144 0.98 3 11 1.4 1.4e+02 4.5 0.3 1 23 148 170 148 170 0.96 4 11 0.013 1.3 10.9 0.1 1 23 176 199 176 199 0.97 5 11 0.00077 0.079 14.7 3.1 1 19 205 223 205 227 0.90 6 11 0.01 1 11.2 2.4 3 23 235 256 233 256 0.96 7 11 4.8e-05 0.0049 18.5 0.3 2 23 268 290 267 290 0.91 8 11 5.4e-06 0.00055 21.5 1.2 3 23 304 324 302 324 0.96 9 11 3.2e-05 0.0033 19.1 0.8 1 23 330 352 330 352 0.98 10 11 4.5e-06 0.00046 21.8 0.6 1 23 358 380 358 380 0.98 11 11 0.0013 0.14 14.0 0.1 1 21 386 406 386 407 0.95
Sequence Information
- Coding Sequence
- ATGACTATCAAACAGGAAGAAATCGTCCTAGAACCCGAAGAAGAATCTAATAAGCTTACTAGAAGGACTAGAAGAAGATtgccaattaaaaaaactaaaagagaTCCTGAATGGAAAATCCAACATAACAGGAAAGCTAAAATTGAACCGAAAGATCGAAAAAATCGAGTAAAGAAAGAAAAGAAATTCTCCCCACCGAAACTTCCCAGAAATCAAAAAGCCAACATGTGGACTTGTAAGTTTTGTTTCGATACTTTCAATTCAAGGAAAGAAATGTTTGAACACAGAAAAGAACATCTCGGAGAAGATAAACACGGCCAAGGTGAAGTTTTAAAATACACTTTTGACGAAGCACACGAAATATATATTTGTACCAATTGCTCGGCAGAGTGCCAAGACCTTGATGAAATCGAAAAACACATAGAAACTCACGAGGAAAAGTTCAGTTGCTATGTATGTAAGGAAGACCTTTTTGGACCCATGAATTACTCTGTGCATGTACAAAAGCATCGAGACGATAAACTATTCCCTTGTCCTTGGTGTCAATACATGTCCCAGAAAAAAGAAGCCATGCAGGTCCATATCAATCGACTGCACCTTCAGATCTACGACTTTCAATGTACCAAGTGCGGAAAATGCTTTAACGATGCTTTAAGCTTTAAGGAACACGACAACGTTCACTTGAACTTAAAGCCTTTTGGTTGCGTGGTTTGTAGCAAGCATTTTTACTATTCCAGATATCTGCTCTCACACCAAATGCGCACCCATATTGTCAGAGTATTAGACCCGGAATCAAAGACCCAATGTAACATATGCCAAAAGATTTTCGCAAGGCTTGATACTTTGGAGAAGCATTATGCGGCTAAACATTTGACGGTGCGCACCGGTCCGTACGAGAAAAAGCATCTCTGTGACGTGTGTGGTCAAGGATTTTCTAGACCCGATAAACTTAAAATCCACTACAGAAAGCACACTGGGGAAAAGCCGTATTCCTGTGTGTACTGCAGCAAGAGTTTTATTAAACGAGATTACTTAATAATGCATGAACGTATACATTCAGGCGAGAAACCTTACAGTTGTGAAATTTGCGGAAAATGTTTCAATCAAGGAGCACCTTTAAGGATTCATTTACGGAGTCATACAGGGGAAAGACCCTATATCTGCCCCTATTGTGGTAGTGGATGCGTTTCAAGGGGAGCTTTGAACAGTCATATTAAAAGCTGCATTAATACTGCCCAAACTTTTGTGAACTAA
- Protein Sequence
- MTIKQEEIVLEPEEESNKLTRRTRRRLPIKKTKRDPEWKIQHNRKAKIEPKDRKNRVKKEKKFSPPKLPRNQKANMWTCKFCFDTFNSRKEMFEHRKEHLGEDKHGQGEVLKYTFDEAHEIYICTNCSAECQDLDEIEKHIETHEEKFSCYVCKEDLFGPMNYSVHVQKHRDDKLFPCPWCQYMSQKKEAMQVHINRLHLQIYDFQCTKCGKCFNDALSFKEHDNVHLNLKPFGCVVCSKHFYYSRYLLSHQMRTHIVRVLDPESKTQCNICQKIFARLDTLEKHYAAKHLTVRTGPYEKKHLCDVCGQGFSRPDKLKIHYRKHTGEKPYSCVYCSKSFIKRDYLIMHERIHSGEKPYSCEICGKCFNQGAPLRIHLRSHTGERPYICPYCGSGCVSRGALNSHIKSCINTAQTFVN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00376607;
- 90% Identity
- iTF_00444448;
- 80% Identity
- -