Pcer025096.1
Basic Information
- Insect
- Polydrusus cervinus
- Gene Symbol
- -
- Assembly
- GCA_935413225.1
- Location
- CAKXYS010000651.1:435323-439864[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00047 0.048 15.4 1.3 1 23 198 220 198 221 0.94 2 10 0.00012 0.012 17.3 0.9 1 23 226 248 226 248 0.97 3 10 8.9e-06 0.00092 20.8 0.5 1 23 254 276 254 276 0.98 4 10 0.027 2.7 9.9 0.8 1 23 282 304 282 304 0.98 5 10 0.00016 0.016 16.9 0.4 1 23 310 333 310 333 0.94 6 10 0.00015 0.015 17.0 2.7 1 23 339 361 339 361 0.98 7 10 0.0012 0.12 14.2 4.4 1 23 367 389 367 389 0.98 8 10 4.6e-05 0.0047 18.6 1.4 1 23 405 427 405 427 0.95 9 10 0.0023 0.24 13.2 0.2 2 23 433 454 432 454 0.97 10 10 2.7e-05 0.0028 19.3 0.3 1 23 460 482 460 482 0.96
Sequence Information
- Coding Sequence
- ATGGAAGAAAGAAAAACTGTTCTACGAGACATGAAAATATGCAGGTTTTGCTTTCATAGCAATGAGCCCGATCTTatcaatatttatcaaaaagaaGCCAAAACTGTCCCTCTACCTGTGCAGATTATGAGTTGTGTTTCCATCGAGGTGTTTCCAAACGATGGCTTACCACAACTCATTTGTAAAGTATGCAAGCAACAAACGAACCAgtcttacatttttaaaagcaatTGCAAAAAGGCTGATGATGCTCTCAAGaacttacTCCTGTCAGGGGAACTTCTTGATCCAGAGATTCTTAAAACTACCCAATTACAGAACAAAAAAAGAGAGACCGCACAAGTAATAACACCAGTAAAAGATGTGAAAAttgtaacaaataattcatcccAGGTGAAAAATCCCAACATAAAAAGGATGAAACTGGACGATGGGACTGAAATTATCACATTGTCTATATCACAGTCTGAGAGCTTTGATAGTCAGGATgAATCTAGTCAAGACTCTGTAGAAGAAGAAAACAGCAAAAGTATTCATGGAGATGAATTTTATCAACGACCAGTTACACCTGAACAGGTTCCGACTAACATTTTTCCATGCCAGTATTGTGACAAAACTTTTCCGCTGAAGCAACTCTTGGAGTTGCACGTAACAAATCATCACAGAGAGAGACAGTTTGCTTGTCCCGAATGCGACAACAAGTTCTTTACTAAGTACGACATGATGAAGCATCAGCAGGTCCACAACGACGAGAAGCCGTTTTCGTGTAGCGCGTGCGACAAAGTGTTTTCTCGCGAGGCCCTCTTAAGGCGCCACGAACAAACGCACGTAGAAACGCCCAAGTATATGTGTCCGCACTGCGAGAACACGTTTCTCGTAAAGGCGGACCTGGACAGCCACGTTCGGAAGCATGAAAAGAAACGACCGTTCAATTGCGCGACTTGTAACAAGAGTTTCGTTTTCAGGCAGGGCCTAGAACGCCACATGAGCGCCGTACACGCAGAAGATCGACCGCACAAATGCAACTATTGCGACTCCAGTTTTAACTCGCCTATTCGTCTCACCAGGCACATTACGACGCACGCCGGACTGCGCCCTTACCCTTGCAAGATTTGTGCCAGGACGTTCCTGCTAAGCCACCACCTGACCAGGCACATGCGAAGCCACTACGCGGCCGAGCAGGGCCGACAGCCAGAGGAGGCAGTCGGCCAGCACAAGTGCGACATCTGTAGTATGTCCTTCAAGAGGAAAGACAGCCTCATCAATCACAGCGCCATCCATAGCATGGTCAATTTAAGATGCGTGATCTGTAACACGTCCTTCGACAACGCCCAGATGGTCAAGGAGCACATCACCACCCATCTTCAGGGTCTTTCTTTTGCTTGCGAAAAGTGCGACTACAGTTTCGAGACGCAGGATCAGCTGGAAGAGCATGAGCTCAAACACGCCGAGATGGAGTATGAGGAACAGATTGAGAAGGAGgtAATATCCGAAGTGCATCAAATCAGGAATCAGATACAGGAAGACGAGTTCGAACTGGAAGAAGATGGTGGTGATGCGACGTTTTTGGACGAGCGTgacATAACAGATTTTCACATACCGGATCTGGACAATGTGACGGCCACCATCACCCCCAGCCAGCAACCCGCTCGAAAGGAACCTTTCGGAAAAACGACGTCTAACCGGGACAAACCCGATTCGAGGAAATCTCTTCGGGATTTTCCGGGATTGCCACAAGAAGCGGCGAAAGAACGGGAACCCACCGACGGGCTGCAGCAGTTCTTCAAGTCGGAGATGACGGATGACACGGAGGGCGAGGAAGCGCCGCATGTTACTGGCGACGACGAGGGGGGAGAGGAGGAGGGTATAAGACCTATTTTCAGGCACGAGGGAACAAAGATGTACGAAAGGAAGGGTCCCATTCAGCGCAAGATTCCCAAAGTACCGTCGTCGCAGCCGGAAGCCATGGAGATGATTCCCCTGGAGGCGATCAACGAACCGCTGAACATGGGCTCCATTACACAAGAAGCTCTCAGCAATCTGCCTTCGAAGAAGCCAGTCAACGTCAAGGTCGGAAATAAAATGGTCAAAGTGCAGAAGTTTATCATTAGTAAGGAGGAAATGAAAGAAATGGCTAAATTAGGTATTTTGGAGCTGAAGAACGGTCTGGTGACGATGAAAAATCCCGGACAACCGATTTTAAATGCGGTGATCAAACCCGTGCAGCAAAGCGACATCGAGAGCCTGATCAAGAGTCAGAAACACGTGATCAAGACTCCGATCAAGCAGTACGATCATCGGCGGGGCCAGAGTAGTCACGCTTACAACGAAAATACCGTCGAGAGTATCATCGACGATTTTAATTAG
- Protein Sequence
- MEERKTVLRDMKICRFCFHSNEPDLINIYQKEAKTVPLPVQIMSCVSIEVFPNDGLPQLICKVCKQQTNQSYIFKSNCKKADDALKNLLLSGELLDPEILKTTQLQNKKRETAQVITPVKDVKIVTNNSSQVKNPNIKRMKLDDGTEIITLSISQSESFDSQDESSQDSVEEENSKSIHGDEFYQRPVTPEQVPTNIFPCQYCDKTFPLKQLLELHVTNHHRERQFACPECDNKFFTKYDMMKHQQVHNDEKPFSCSACDKVFSREALLRRHEQTHVETPKYMCPHCENTFLVKADLDSHVRKHEKKRPFNCATCNKSFVFRQGLERHMSAVHAEDRPHKCNYCDSSFNSPIRLTRHITTHAGLRPYPCKICARTFLLSHHLTRHMRSHYAAEQGRQPEEAVGQHKCDICSMSFKRKDSLINHSAIHSMVNLRCVICNTSFDNAQMVKEHITTHLQGLSFACEKCDYSFETQDQLEEHELKHAEMEYEEQIEKEVISEVHQIRNQIQEDEFELEEDGGDATFLDERDITDFHIPDLDNVTATITPSQQPARKEPFGKTTSNRDKPDSRKSLRDFPGLPQEAAKEREPTDGLQQFFKSEMTDDTEGEEAPHVTGDDEGGEEEGIRPIFRHEGTKMYERKGPIQRKIPKVPSSQPEAMEMIPLEAINEPLNMGSITQEALSNLPSKKPVNVKVGNKMVKVQKFIISKEEMKEMAKLGILELKNGLVTMKNPGQPILNAVIKPVQQSDIESLIKSQKHVIKTPIKQYDHRRGQSSHAYNENTVESIIDDFN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00196627; iTF_01241151;
- 90% Identity
- -
- 80% Identity
- -