Pcer035737.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Polydrusus cervinus
Gene Symbol
-
Assembly
GCA_935413225.1
Location
CAKXYS010001144.1:179973-186018[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0091 0.93 11.4 6.2 1 23 138 161 138 161 0.98
2 16 0.0027 0.28 13.0 0.7 2 23 166 186 166 186 0.97
3 16 0.00066 0.067 14.9 1.8 1 23 216 239 216 239 0.98
4 16 0.0026 0.27 13.1 2.4 2 23 326 348 325 348 0.97
5 16 0.00011 0.011 17.4 0.7 2 23 353 373 352 373 0.97
6 16 0.00061 0.063 15.0 1.9 2 23 379 400 378 400 0.94
7 16 0.73 75 5.4 0.8 2 23 406 427 405 427 0.80
8 16 0.092 9.4 8.2 0.7 3 23 569 588 568 588 0.87
9 16 0.001 0.1 14.4 2.3 1 23 593 616 593 616 0.93
10 16 8.7e-06 0.00089 20.9 1.5 2 23 627 648 626 649 0.95
11 16 0.53 54 5.8 0.0 2 23 653 673 653 673 0.93
12 16 0.01 1 11.2 2.3 2 23 679 700 678 700 0.92
13 16 0.0003 0.031 16.0 1.1 1 23 706 728 706 728 0.98
14 16 0.56 58 5.7 1.0 3 23 738 755 736 755 0.84
15 16 2.6e-06 0.00027 22.5 0.9 1 23 761 783 761 783 0.98
16 16 0.0012 0.12 14.1 0.6 1 23 789 812 789 812 0.97

Sequence Information

Coding Sequence
atggacttAGATAACAAATGCAGAACGTGCCTTCGTATCCCCAAACTACCCACAGATTTATTTAAAGACGATAACCTCCTCAAAATAATTCAAGATATATCTTCTGTAAAAattgaaTATGTAAATAAATTGCCCACACATATCTGTGAAGAATGTTGttcaaatctaaataactttgacAGCTTTCGTCAGCTTATAATCAATACAGAACTTGAGTTACAAAGTTTGCTTGAAGCTCTAAAAGAACCTTCAAACCATGTAAAACTTAAAACCGAGAGTGGTAACAGTTCTGAAATAGATATAAGAATTAAGTCTGAAATagaagaaaatattgatttcaCTGAGGATAATTTAGAATCCAAGACAGATATAAAGAAAATCAGTATAGTGAACACaactgaaaagaaaatttttaaatgttctgAATGTGAATTAGTTTTTACCTTAAGACATCAATTGTACAACCATAAGCGCTCATGCCATATACCACCTAGGACATGCAATATTTGTGGTTTAACGGTGCGTGCTGATAGTTTTAGAAGACACCTAAAAAGACATGGTGACATACCCTGTGATCTTACTGATCCTGATAATACTCAAGAAGATAAAATAGATGTGAACCCGGCTATAGAAGTGGAAAAAATTTTCAAGTGTCAAGACTGTGAAGAAGTTTTTAACTTACGTCAAGAGTTATACAGTCATAGAAGAAGAAAGCACAGACCTCCAAAAGTATGCAATATATGTGAACATGAATTACAAAAAAGGCTCCAATACATAAAAGAGACTAACTGTTCTCTAAGACCACAGCACAGAGTTAAGCACGAGACAGAAGGTAATAATGGTTCTGATTTTCTAATTGATGTAAAAGATGAACCTCAAACTGATTTAAAAAGTGATCTTAATTTGGACAATGGTGGAGATAGTTCTGAAGATGGTTTAGATGTTAAAGAAACCATCGCTGTGGAAAAAGCATCCAAGTGTCAAGACTGCGAAAGACCTTTTAACTCTGAAGTAGAGTTTAAAAATCATAGACATACTATGCATGTTCCTTCaggtaaatgttatatttgtggtaaAGTTGTTCGTGCTgatcacttaagaaaacacataAGACTTCACTCAGATGAGCCCTGTGTATGCGAGGATTGTGGAAAGACCCTTAAAAATACAGAATCATTGAGAACTCATAAATTATTGCATGTTCAGCAGGCAGTTACTTGTGAAATATGTGGGAAAATATCTAAATCAAAAAGGAGTCATGGTGGGCATTTAAGGGAGCACAGAGTTAATCTAAGCGAACTTCCGTCTCAAATCTGTGAAGAgtgttttacaaatataaatcgTTTTTACAACTTCCGTAAAGTTATAATCAATACAGCACAGGACTTACAAACAAGACTGGAAACCTTAAAGAATGCCCACTATTCTGTAAAATCCAGGAGCAATATAAAGtattttgtaaaagaaaatgaaaatgcTCCTGAACTACATGTAAATATAAAGTCTGAAACTGAATTACAGAATGATGtatttataaacacttgtgATAATAGTCCAGATGATAATGTAGATTTTAGCTATGATAATGACGATTCAAATGTAGGAGAAAATGGAGTGGAAAAAGTATTTAAGTGTGAACACTCTGAAGAAATTTTGACCAGGCTAGAACCAACCATTGATAAGCACAAGCACACCGAAGGTGCTTGTAAAGTTTGTGGAAAGACTTTAAATACTAAGTCATTAAGGGTACATAAGTTTGTTCACCCTAGGTCTAATTTTACTTGTGAGATATgtggaaaaatgtttaaaaggaATTGGCAACATTATAGGCATGTAATAATGAAACACAAAGAACTTTCAAAAGATCCCATTGTAATTAAGTGTCCAGACTGTGAACAAACTTTTCCTTCAAAAATACAGTTACGGAAACATAGGCGCGCCCATCACCTTACAGGTGTATGCACTATTTGTGGTGCGATTATGAGAGCCGATAACTTGCTGAAACATGTAAAAGGTCACACTGAAGGGCCTTGCACTTGTGAAATATGTGGCAAGACAGTTAAAAACTCCGAATCGCTAAGGTTTCATAAGGCCAGACACACGGAACAAAAGGAGTATCCATGTGAAATATGTGGCACAATAACTaattcaaaaagaaattattacaGACATCTGAAATATCATAAAGATCCAGACTTTAGAAAAGTAATGTGCTCTGTTTGTGGCAAAAGAGTTGTTGGTCTAAAACGACACATGCTCTCTCACACTGGCGGGAGACCCTATAGCTGTACTTATTGCGAAAAGGGGTTCACTTCACCATACGCCTTAAAGGTTCACACCAGGCAGCATACAAAAGAAAAACCCTACATATGTGAATATTGTAGTGATGCATTTCCCCAAAAAGTATCtttaaaaacacatttaaaaagtAAGCATGGAATAACAgagtaa
Protein Sequence
MDLDNKCRTCLRIPKLPTDLFKDDNLLKIIQDISSVKIEYVNKLPTHICEECCSNLNNFDSFRQLIINTELELQSLLEALKEPSNHVKLKTESGNSSEIDIRIKSEIEENIDFTEDNLESKTDIKKISIVNTTEKKIFKCSECELVFTLRHQLYNHKRSCHIPPRTCNICGLTVRADSFRRHLKRHGDIPCDLTDPDNTQEDKIDVNPAIEVEKIFKCQDCEEVFNLRQELYSHRRRKHRPPKVCNICEHELQKRLQYIKETNCSLRPQHRVKHETEGNNGSDFLIDVKDEPQTDLKSDLNLDNGGDSSEDGLDVKETIAVEKASKCQDCERPFNSEVEFKNHRHTMHVPSGKCYICGKVVRADHLRKHIRLHSDEPCVCEDCGKTLKNTESLRTHKLLHVQQAVTCEICGKISKSKRSHGGHLREHRVNLSELPSQICEECFTNINRFYNFRKVIINTAQDLQTRLETLKNAHYSVKSRSNIKYFVKENENAPELHVNIKSETELQNDVFINTCDNSPDDNVDFSYDNDDSNVGENGVEKVFKCEHSEEILTRLEPTIDKHKHTEGACKVCGKTLNTKSLRVHKFVHPRSNFTCEICGKMFKRNWQHYRHVIMKHKELSKDPIVIKCPDCEQTFPSKIQLRKHRRAHHLTGVCTICGAIMRADNLLKHVKGHTEGPCTCEICGKTVKNSESLRFHKARHTEQKEYPCEICGTITNSKRNYYRHLKYHKDPDFRKVMCSVCGKRVVGLKRHMLSHTGGRPYSCTYCEKGFTSPYALKVHTRQHTKEKPYICEYCSDAFPQKVSLKTHLKSKHGITE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-