Basic Information

Insect: Polydrusus cervinus
Gene Symbol: -
Assembly: GCA_935413225.1
Location: CAKXYS010000209.1:191666-203309[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.03 3 9.7 0.1 2 23 191 213 190 213 0.94

2 10 0.011 1.2 11.1 0.5 1 23 220 242 220 242 0.95

3 10 0.18 19 7.3 0.2 1 23 248 270 248 270 0.98

4 10 1.6e-06 0.00017 23.1 1.3 1 23 276 298 276 298 0.99

5 10 2.2e-06 0.00022 22.7 0.1 1 23 307 329 307 329 0.98

6 10 1.6e-07 1.6e-05 26.3 0.5 1 23 335 357 335 357 0.99

7 10 0.0023 0.24 13.2 1.7 1 23 363 385 363 385 0.96

8 10 3.3e-05 0.0034 19.1 3.3 1 23 391 413 391 413 0.98

9 10 5.5e-05 0.0056 18.3 3.0 1 23 419 441 419 441 0.98

10 10 0.00013 0.014 17.1 5.2 1 23 447 470 447 470 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.03	3	9.7	0.1	2	23	191	213	190	213	0.94
2	10	0.011	1.2	11.1	0.5	1	23	220	242	220	242	0.95
3	10	0.18	19	7.3	0.2	1	23	248	270	248	270	0.98
4	10	1.6e-06	0.00017	23.1	1.3	1	23	276	298	276	298	0.99
5	10	2.2e-06	0.00022	22.7	0.1	1	23	307	329	307	329	0.98
6	10	1.6e-07	1.6e-05	26.3	0.5	1	23	335	357	335	357	0.99
7	10	0.0023	0.24	13.2	1.7	1	23	363	385	363	385	0.96
8	10	3.3e-05	0.0034	19.1	3.3	1	23	391	413	391	413	0.98
9	10	5.5e-05	0.0056	18.3	3.0	1	23	419	441	419	441	0.98
10	10	0.00013	0.014	17.1	5.2	1	23	447	470	447	470	0.98

Sequence Information

Coding Sequence: ATGGAAATCCGTTGTCGTCTATGCGCTGATACATATCCACATCTAATTCAAATATTAACAGATACGCGATTTTTAACAATGCTTGAGTACttttttcagttaaaaataGACTTGGAAGATAAATTACCAACGACAGTTTGTCAGGAATGTTATCAACTAGTTGAGAGAACCTGGCTATTTAAAGAACAAGTAGATAAAGCTCAATTGTCTTTGAGGGAGATAGTTAATGTAGAAGTCCTGTCTACTAATTTGGAAGATGATATTGCAGAGGATTCTGTTTACAAATCTGAGTATGAATCAGATTACAACACTGATAGCAAAtcatttgatattttaactaaCACCTTGGTACATAATAGTAAAAACTTGCATATTAACCATCAAGATGAGCCTCAAACCAACATTGAACAAGACCCTAGATCTCACATTAAGAAAACAAAAAAAAGCTCCAAATCCATTAAAAGGACCAAATCCACAGAGCTGGAAGGGTTTAAGGAAATTGAATATATAAATCCAGATGGCAGTGTTGTTCCTAAACCAGGAATTTCTGGTTGGGACTTATATCAGTGGACATGTTCTGAGTGCAATGATGTATTTCGAGCCGCAGATGATCTCCGGGATCATTTTGCTActgtacataatattatttcAGTTAGATATCCATGTATAGATTGTCCTAAGGTTTATTCCAAATATACCAGTTTTATCAGCCATGTAAAGTATCACAGGCCATTTCTTAAATACTCATGTGACATTTGCTACAAGTGGTATGCTACAGCGAAGGAAGTAGATGTTCATCAAACAACTCATTATGAAGAAGACCCATACCAATGCAATACATGCGGAAAACGGTATCGAGTGCAATCCCTCCTTATGATACACACTAGATCCCATTTACCTAGCGACTTGAAGAACTGTTACCCTTGTGATGAGTGCCCTAAAAAATTTGgAACCAAACCTAATCTCATGGCTCATAAGAGAATACATTTGGGTGTCAGGGAGTATACTTGTGACCAGTGTGGGAAAAGCTTTGTTCAAAAAGGAAACCTTGACAACCACTTACTCACCCACGATTCTGCCAGACCTTATAATTGTTTTGTGTGCGAAAAAACATTCAAGTCTTTGATTCGTCTCAGAAAACATAGTTCAATACACTCTGGATTAAAACCTCATCAATGTGATATTTGTGGAAGGCAATTTAGGGAACGTGGTACTTTGAAAGAACATCACAGAATTCATACGGGCGCAATGCCTTTTACCTGCGAATTTTGTGGAAAACGTTTTAGATTTAAAGGAGTTCTTACGACACATAGGCGACAACATACAGGTGAGAGACCCTATTCCTGTGCTGAATGCCAACACCATTTTACCAACTGGCCGAATTACAACAAACATATGAAACGACGACATGGAATTAACACTAGTGTCAATTGTCGGACGAAACAAGACATACCGCCAACTGGAAAACCTCACCGCAACCCACCTGGTACTGTTTTAGCAGCGCCACAACCACAACCACCTTTACAAGTGATATGTCAAACTAGTGCTGCTCCTTTGGAGACGTTTACGGAAGGTCCTACTTCAGCCTTTTATCCCGTTCTAGGACTCTATGGAATACCTGAAGACTTAGCTAAGGGGTAA
Protein Sequence: MEIRCRLCADTYPHLIQILTDTRFLTMLEYFFQLKIDLEDKLPTTVCQECYQLVERTWLFKEQVDKAQLSLREIVNVEVLSTNLEDDIAEDSVYKSEYESDYNTDSKSFDILTNTLVHNSKNLHINHQDEPQTNIEQDPRSHIKKTKKSSKSIKRTKSTELEGFKEIEYINPDGSVVPKPGISGWDLYQWTCSECNDVFRAADDLRDHFATVHNIISVRYPCIDCPKVYSKYTSFISHVKYHRPFLKYSCDICYKWYATAKEVDVHQTTHYEEDPYQCNTCGKRYRVQSLLMIHTRSHLPSDLKNCYPCDECPKKFGTKPNLMAHKRIHLGVREYTCDQCGKSFVQKGNLDNHLLTHDSARPYNCFVCEKTFKSLIRLRKHSSIHSGLKPHQCDICGRQFRERGTLKEHHRIHTGAMPFTCEFCGKRFRFKGVLTTHRRQHTGERPYSCAECQHHFTNWPNYNKHMKRRHGINTSVNCRTKQDIPPTGKPHRNPPGTVLAAPQPQPPLQVICQTSAAPLETFTEGPTSAFYPVLGLYGIPEDLAKG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00196635;
90% Identity: -
80% Identity: -