Basic Information

Insect: Polydrusus cervinus
Gene Symbol: -
Assembly: GCA_935413225.1
Location: CAKXYS010000996.1:263170-292305[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 1.7e-06 0.00018 23.1 2.3 1 23 426 448 426 448 0.98

2 7 3.7e-07 3.7e-05 25.2 0.4 2 23 457 478 456 478 0.97

3 7 1.3e-05 0.0014 20.3 0.3 1 23 484 506 484 506 0.98

4 7 9.9e-08 1e-05 27.0 2.5 1 23 512 534 512 534 0.98

5 7 1e-05 0.001 20.7 0.5 1 23 540 562 540 562 0.98

6 7 8.4e-05 0.0086 17.8 6.1 3 23 570 590 568 590 0.96

7 7 9.7e-06 0.00099 20.7 1.6 1 21 596 616 596 617 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	1.7e-06	0.00018	23.1	2.3	1	23	426	448	426	448	0.98
2	7	3.7e-07	3.7e-05	25.2	0.4	2	23	457	478	456	478	0.97
3	7	1.3e-05	0.0014	20.3	0.3	1	23	484	506	484	506	0.98
4	7	9.9e-08	1e-05	27.0	2.5	1	23	512	534	512	534	0.98
5	7	1e-05	0.001	20.7	0.5	1	23	540	562	540	562	0.98
6	7	8.4e-05	0.0086	17.8	6.1	3	23	570	590	568	590	0.96
7	7	9.7e-06	0.00099	20.7	1.6	1	21	596	616	596	617	0.95

Sequence Information

Coding Sequence: ATGTCTACCATACTAGATTACATCTATACCGGTACCAGTGTAGTCTACAGTAACTATCTCAAAGAGTTTCTTTCCGTAGCCAGTTTTCTAGAAATTGCTGTAGATACCGGCAATATGGAGAATGTTATGGAGAACCTACATAAAGTTGAAGATATTAAAAAGCTCGAAACAGAATGTAATAGTAAAAAGAGATTGATGGGGCCTACTTTTTCCGCTGGCGAAAGGGTTAGTTtggaaaatgttaaatatagCAAAAAGGATGTAAAAAATCAAGATGTAGAATGTGTTGATGTAAGAAAAGAAGTATTAGATGATCTCTCTGAACCAAGTTTAGAAGTTACACATAATtcgaaattaaatatttttcaacgaTCAACTCAGAAAAAGTTACCTGAACTTTTACCCATAAgtagtaaaatttttagaaaaaacgtTCAACGAAAAATGTGTAATGCGGTTGTTCCTAGTCCATGGTGCCAGAGGAACGATAGGAGCTTTTTAGGAGACCCAAGGGCAGTAACTTTGGGAAGTTCTGAAGAGGTTCAAAAACTGCACACGGAAGACACCAACAACAATTTCCAACTATTCCAGAACAGCGATACTCCCAAGGGTTTTCCAAAAAGCCTCGACAGTATCATCCGGCATCTATACTTAAATAATCTCGACAACAGCAAGGAAAGGACTAAAACCAATACAACTTTAGGTGAAGATTACTCGACAAAAAGTGACGTGGTGGTTCAATCTAGTGAAATTTGTCAAATAGATATTGACAAAGCAGTTGAACTGCCTAATGTGAAAAGCTTTTCGTTTTCGCGGAGTTTAGTTGCTTTAAAACTATTGGAGAATAAAACTCAGTCTGAAACCTCTGattgtattaataatttaagcaCAAAGTGTAGTGATAAACACCTACGGAGTTTTCTGGGCAATTCCTCTTCAGAACTTGTTAAAAACAATGTTTCCCAGTCTGATTTTGCACAAAACCTAAGTTTATCTAGAAAAAGTACCTGCTTACCTCAAACTTCCCCTCCCAGTGGTACTTTAACACAAGATCCTCCTACAATTTTAAAGACTTCCTTAACATCACCAAACTATTTTTATGAAACTTCAAGAACTAATACCAAGAAGAAGCTTACACCATCCACGTGTATCGAACTTAACTCAAATTCTAACGATAACAGTAGTTTCAATGACGTCTCGAATAATAATTCCTTGAGCAATGATTCCAGTGGAGATGAGAAAAAACAAGATGAAGCGAACGCCAAGAAGAAATCATATAAATGTGAAGACTGTGGAAAATCTTTTAGTCAATTGAGGAATTATAAGTATCATAGATCGATACACGAGGGCACAAAGGAGTTTTCGACAAAATGTCCAGAGTGCGGCAAAATGTTTAACGACAGAGGATACCTGAGTAGTCACATGAAAATTCATAGAGACAGAAAAGAATATGCCTGTCCTAACTGTCCAAAAAGATTTAACCAAAGAGTCGCTTATAACATGCATTTACGAATACATacaggtattaaACCTCATGAGTGTCCTACCTGTGGGAAAAGTTTTTCCAGGAAAATGCTGCTGAAACAACACCAAAGAGTCCATACAGGAGAAAGGCCTTACACCTGTCCAGAATGTTTCAAAACATTTGCAGATAGGTCCAATATGAGCTTGCACGCCAGACTACACACAGgtaTCAAACCCTACGGATGCACGCTCTGTCCGAAAAGCTTCACCAAGAAGCACCACTTGAAGACCCACATGAATTTCCACACCGGACTGAAACCGTACACCTGTGACCATTGTGGATTGGCGTTTTCGCAAAGTAGCAACATGAGGActcattataaaaaatgtgtctTAAAAGAtggcattggaaaaaatacaaaatcggAGAGTGTCAGTTCAGcggaaaataataattcttcTTGA
Protein Sequence: MSTILDYIYTGTSVVYSNYLKEFLSVASFLEIAVDTGNMENVMENLHKVEDIKKLETECNSKKRLMGPTFSAGERVSLENVKYSKKDVKNQDVECVDVRKEVLDDLSEPSLEVTHNSKLNIFQRSTQKKLPELLPISSKIFRKNVQRKMCNAVVPSPWCQRNDRSFLGDPRAVTLGSSEEVQKLHTEDTNNNFQLFQNSDTPKGFPKSLDSIIRHLYLNNLDNSKERTKTNTTLGEDYSTKSDVVVQSSEICQIDIDKAVELPNVKSFSFSRSLVALKLLENKTQSETSDCINNLSTKCSDKHLRSFLGNSSSELVKNNVSQSDFAQNLSLSRKSTCLPQTSPPSGTLTQDPPTILKTSLTSPNYFYETSRTNTKKKLTPSTCIELNSNSNDNSSFNDVSNNNSLSNDSSGDEKKQDEANAKKKSYKCEDCGKSFSQLRNYKYHRSIHEGTKEFSTKCPECGKMFNDRGYLSSHMKIHRDRKEYACPNCPKRFNQRVAYNMHLRIHTGIKPHECPTCGKSFSRKMLLKQHQRVHTGERPYTCPECFKTFADRSNMSLHARLHTGIKPYGCTLCPKSFTKKHHLKTHMNFHTGLKPYTCDHCGLAFSQSSNMRTHYKKCVLKDGIGKNTKSESVSSAENNNSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -