Basic Information

Insect: Polydrusus cervinus
Gene Symbol: -
Assembly: GCA_935413225.1
Location: CAKXYS010000076.1:3882-4793[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.5e-05 0.0016 20.1 0.3 2 23 39 61 38 61 0.94

2 9 1.7e-05 0.0017 20.0 0.1 2 23 68 90 67 90 0.93

3 9 0.0044 0.45 12.4 1.9 1 23 97 120 97 120 0.88

4 9 0.00014 0.014 17.1 0.7 1 23 126 149 126 149 0.92

5 9 0.0003 0.031 16.0 0.0 2 23 157 181 156 181 0.93

6 9 0.0015 0.15 13.8 3.5 3 23 190 210 189 210 0.97

7 9 5e-06 0.00051 21.6 0.4 1 23 217 239 217 239 0.99

8 9 0.001 0.1 14.4 0.2 1 23 245 267 245 267 0.96

9 9 6.1e-06 0.00062 21.3 1.8 1 23 273 296 273 296 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.5e-05	0.0016	20.1	0.3	2	23	39	61	38	61	0.94
2	9	1.7e-05	0.0017	20.0	0.1	2	23	68	90	67	90	0.93
3	9	0.0044	0.45	12.4	1.9	1	23	97	120	97	120	0.88
4	9	0.00014	0.014	17.1	0.7	1	23	126	149	126	149	0.92
5	9	0.0003	0.031	16.0	0.0	2	23	157	181	156	181	0.93
6	9	0.0015	0.15	13.8	3.5	3	23	190	210	189	210	0.97
7	9	5e-06	0.00051	21.6	0.4	1	23	217	239	217	239	0.99
8	9	0.001	0.1	14.4	0.2	1	23	245	267	245	267	0.96
9	9	6.1e-06	0.00062	21.3	1.8	1	23	273	296	273	296	0.96

Sequence Information

Coding Sequence: ATGAACGATCTGATAATAGTTCCTCAAAAAATAAGCCCTCCCCCATTAAAGAGATTAACTGAACTCGCCAAAGAAACGCCCCCAATAGTAAAAACTGTGAAAAAGGAAAAATTGCCTTGTCCAGAATGCGGAAAATTATTTGCTAAAAGAAAACATCTTAACGCACATGTAAATAATGTTCATAATCGTGCAAAAGTGACTCCCTGTACAGAATGCGGTAAAGTTTTTGTAACCAAAGGGTCTTGGAAGAATCACGTCGATGTTATTCATCGAGGGGTTGTTCATAATTTCGCATGCGACATTTGTGGGGCAAAATTTACTTCCAAAAACTCCTTAAAATTTCATAGAATCCATACTCACGTACAAAAATTCAACTTTCATTGTGATATTTGTAATAAAGGATTTATTTACGAAAGTGCATTGAAACAGCATAATTCGGTAGCACATGGAGATGGGATCCCTACTCTTCCTTGTCCTAAGGAAGGATGTAACAAGGCGTTTGTAACTACTGGTGGTTTAAAGTATCACATTCGGGCGGAGCATACTGAAGACAAACCCGAACTTCTTTGTGCACACTGTGGAAAAACTTTTGACCACCCTACTGTGTACAGTAAGCACCTTAGATTTCATAAAACCGGTCGTCCGGAATACAAGTGCAGCATTTGTCAGAAGATTGTTACATCTAGATATGGTTTACAAGGTCACATGCGTATTCACACAGGAGAAAAGCCCTTTATTTGTGAGCAGTGCGGAACAGGTTTTAGGACGATAACTATCCTAAAAAAGCATATGGTTGTTCATACGAAAGAAAAACCGTATGCATGCAAATTTTGTGATAAAAGATATACTCAGCCGTCTCCTCTTAATCGACACATTAAACACGTACATCTAGAATTAGTAGGAAAACAATAA
Protein Sequence: MNDLIIVPQKISPPPLKRLTELAKETPPIVKTVKKEKLPCPECGKLFAKRKHLNAHVNNVHNRAKVTPCTECGKVFVTKGSWKNHVDVIHRGVVHNFACDICGAKFTSKNSLKFHRIHTHVQKFNFHCDICNKGFIYESALKQHNSVAHGDGIPTLPCPKEGCNKAFVTTGGLKYHIRAEHTEDKPELLCAHCGKTFDHPTVYSKHLRFHKTGRPEYKCSICQKIVTSRYGLQGHMRIHTGEKPFICEQCGTGFRTITILKKHMVVHTKEKPYACKFCDKRYTQPSPLNRHIKHVHLELVGKQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01239419;
90% Identity: iTF_01239419;
80% Identity: iTF_01239419;