Pcer028758.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Polydrusus cervinus
Gene Symbol
-
Assembly
GCA_935413225.1
Location
CAKXYS010000795.1:966571-981725[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.0088 0.9 11.4 2.9 1 23 307 329 307 329 0.98
2 12 0.0033 0.34 12.7 0.5 2 23 402 424 401 424 0.94
3 12 0.00012 0.012 17.3 2.2 1 23 430 452 430 452 0.98
4 12 0.00062 0.064 15.0 0.9 3 23 465 486 463 486 0.96
5 12 1.4e-05 0.0014 20.2 4.2 1 23 491 513 491 513 0.97
6 12 0.069 7.1 8.6 5.2 1 20 519 538 519 541 0.93
7 12 8.3e-06 0.00085 20.9 1.7 1 23 547 569 547 569 0.98
8 12 6.5e-07 6.7e-05 24.4 0.3 1 23 575 597 575 597 0.98
9 12 7.5e-06 0.00077 21.1 1.8 1 23 603 625 603 625 0.98
10 12 0.00036 0.037 15.8 3.9 1 23 631 653 631 653 0.99
11 12 0.69 71 5.4 1.6 3 23 661 681 659 681 0.97
12 12 2.7e-06 0.00028 22.4 1.7 1 23 687 709 687 709 0.97

Sequence Information

Coding Sequence
ATGGAGCCGGAACATTTATTATCAAATTCCAAATATTGCAGACTTTGttgtgaagaaaataaaaatggaatacATTTATTTACTGAAGAGGATAATTCTGAAGATCTGAGCACTTTGGTCAATAGGTATTTGCCGATAAAGgtagaTGTTGATGATCCCTATCCAAAACTAATATGCCCTGGTTGCCACATTCAACTGGAAGCCTCAAAACTGTTTATGGACCTTATTCTCGAAGGACAAGCCAAGTTACGGAAACTATTAAAAACACAGCAGGATCGTGTCGAAAgagaagaaaaagaaagaaaaaaattggaaGAAGCATTAAAGAACCATAATCCGAATGCCAGTGTTGAGACATATACCATTCAGACGGATGAAAATGGggaaaaatttattatacaaaTTTACAGCGAGGGTCCACTCTTTTTACCAGAACATGAATTGGCTTGGAAAGCTGAGGGGCTCAAAAAACCAAAGAGAAAGAGGGGCCGACCACCAAAAGTTGTACCAAATCCAGATTCTGAGCAATTGGATAATGGTTCCGAGGAGCAAGGTGAAATAAAAGAAGTTGTATCGACTACGTCAGAAACTGAACAGAATGAAGTACCTGTGAAAGAAGAAACAACAACAGATGATTTTGATACAAGAAGGAAAAGAAGAATTAAGGCTCCTGCTAGATATGCAGGAGTAGTGCAAggCAGGGAGTTAGATAAAATCTTGAAAAAGGAGGGAGTGATAGATGAAGACATCGAAGACGTTATGGAAGAAGGAAAAAACACTGTAGGAGATTCGGAGCAGGAGAGTGGAAAGCCAATAGGAAGACTCGTAACAAATGACGGTGCATTGGAAGAGCCTGTGTATCCAAATAGGAGAcgcgttaaattaaaaaaatatagagGCCATAAGCAAAAGCATAGATACACGTGCGGTATATGCAACAAGGAATTCCAGCACAGTGGCAGATATGAGTTACACAAAAAGAGTCATAAGATTAAGTTTGCCTGCCAAGAACGAGGTTGTCAGTTTCAAGATGAGAACAGGAGTATCGTTGAACAACATCAGATTGACACAGAGCATGATGGGATCTCAAAAATTGAACACATAGAGGCATATAATGGAACGGTTATTCTACCCGATTCCAGTTCTTTAAACACTACAGGACAGCTTGAGGACCCACCAGAAGTTTCAGAAGATAAACCGATAACGTGTCcgatttgtgaaaaaagtttCGCCTGTAAACAAAACTACGAGGTTCACCTTAAAGCTATACATGACAGGGAGAAGCCATTTAGGTGCGGTAAATGTACAAAatcGTTTGCTTACGCCTGCAGTCTTAAAGCCCATGTCATGTCCCACAACAACAAAGATAATGGCATCATGGAACAGTTCGGTTGTGAAAAGTGTGAGAAGATTTTCAACCATCCCAGCAGCTTGATATATCACAAAGAGACAGAACATGGGACTCAGAGGTTTATTTGCAATAAATGCGACAGATCCTTCAAACATCGTCAGCTTTTGCAACGTCATCAAACCGTTCACACGGAAGAGCGACCATTCCACTGTTCAGCGTGTTCGCAGACgttcaaaaccaaaactaactTGATCAACCACGAAAATTGCCATACGGGATTGAAGAAATTCACTTGTTCTATCTGTGGGCAGTCCTTTATGCATAAAACGTCGTTATCTGCTCATTTAAGGTGGCACGAAGGTCACAAACCTTACGAATGTGACGTGTGCAAAAAAGCATTCTCTCAAAAAGGGAATTTGATCGAACACAAGCGGATTCACACTGGAGAAAAACCGTATACTTGTGATTTGTGTGGAAGGAGCTTTACCACTTCTTCACAGTGGAAGTTGCACAGCAAACGTCATACAGGAGAGAAACCTTATAGTTGTGAATATTGCCAGAAAAGGTTTCTGCACAAGGATACATTAGTAACCCATATACGAAGACATCTGGATATACGTCCCTTTGGGTGTTCGTTTTGCGAGAAAAAGTTTGCGGAAGCATGGGCTTGCTCGAGACACCAAAGACTACATTTGGGAGAAAAACCGTATCATTGTGATGTTTGCGACAAagcGTTTTCCGACGCGTCAAACTTCAACAAACATTCAAAAATTCATCAAAGAAATGGCATAAAACCGAGTAATTTGGATACACAAGCTCGGAATAGTAAAGATACCCAGTTTCAGTCAGATTCAATTGATGTGGAGATCATTATTCCCTATGAACCCGAACCCACGACGCAGAAGGAAAGTGACACAGAGgtTATCTCGTCAAACAGTCTTCAGTTCCAGGAACTTTTAGACGCCGACGGGAACATAATCAGTTTGACCACCGCCGACGGTCAACCCATCCCTATAGTTTCGTCGGACAACGAAAAAATCCAAGGTTTGATGCCTGACGGGACTCTGGTCAGTTTCGATATATTGAATGAGGAACAGAGCAATAAATCGCAAAGTCAACCGGCAAagGAGGTCGCCAACCAAGAAATTAATCTCATTAACACAGATATCCAGTTCCTAGAAGAAAATTCCATGTCAAGTACCGTCGGTGTGGATAAGCCCGCTTTTCTATTAGAGGACGGGAAAGTTTGTTTAATATCCTCTTTCGATGAAAATTCGTTCTTAACTATGAGCTAA
Protein Sequence
MEPEHLLSNSKYCRLCCEENKNGIHLFTEEDNSEDLSTLVNRYLPIKVDVDDPYPKLICPGCHIQLEASKLFMDLILEGQAKLRKLLKTQQDRVEREEKERKKLEEALKNHNPNASVETYTIQTDENGEKFIIQIYSEGPLFLPEHELAWKAEGLKKPKRKRGRPPKVVPNPDSEQLDNGSEEQGEIKEVVSTTSETEQNEVPVKEETTTDDFDTRRKRRIKAPARYAGVVQGRELDKILKKEGVIDEDIEDVMEEGKNTVGDSEQESGKPIGRLVTNDGALEEPVYPNRRRVKLKKYRGHKQKHRYTCGICNKEFQHSGRYELHKKSHKIKFACQERGCQFQDENRSIVEQHQIDTEHDGISKIEHIEAYNGTVILPDSSSLNTTGQLEDPPEVSEDKPITCPICEKSFACKQNYEVHLKAIHDREKPFRCGKCTKSFAYACSLKAHVMSHNNKDNGIMEQFGCEKCEKIFNHPSSLIYHKETEHGTQRFICNKCDRSFKHRQLLQRHQTVHTEERPFHCSACSQTFKTKTNLINHENCHTGLKKFTCSICGQSFMHKTSLSAHLRWHEGHKPYECDVCKKAFSQKGNLIEHKRIHTGEKPYTCDLCGRSFTTSSQWKLHSKRHTGEKPYSCEYCQKRFLHKDTLVTHIRRHLDIRPFGCSFCEKKFAEAWACSRHQRLHLGEKPYHCDVCDKAFSDASNFNKHSKIHQRNGIKPSNLDTQARNSKDTQFQSDSIDVEIIIPYEPEPTTQKESDTEVISSNSLQFQELLDADGNIISLTTADGQPIPIVSSDNEKIQGLMPDGTLVSFDILNEEQSNKSQSQPAKEVANQEINLINTDIQFLEENSMSSTVGVDKPAFLLEDGKVCLISSFDENSFLTMS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00196614;
90% Identity
-
80% Identity
-