Pcer016840.1
Basic Information
- Insect
- Polydrusus cervinus
- Gene Symbol
- -
- Assembly
- GCA_935413225.1
- Location
- CAKXYS010000353.1:193130-195928[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 8.2e-06 0.00084 20.9 6.4 1 23 205 227 205 227 0.98 2 9 1.1e-05 0.0011 20.5 0.4 2 23 234 255 233 255 0.96 3 9 3.6e-06 0.00037 22.0 1.2 1 23 261 283 261 283 0.98 4 9 3.2e-08 3.3e-06 28.5 2.9 1 23 298 320 298 320 0.96 5 9 0.00015 0.016 16.9 2.3 1 23 326 348 326 348 0.99 6 9 0.00022 0.022 16.5 3.3 1 23 354 376 354 376 0.97 7 9 7e-05 0.0072 18.0 3.9 1 23 382 404 382 404 0.98 8 9 0.0026 0.27 13.1 3.2 2 23 411 432 410 432 0.96 9 9 2.3e-05 0.0023 19.5 4.1 3 23 440 460 438 460 0.92
Sequence Information
- Coding Sequence
- ATGAATAACCAGTTTTTACAGAAAGAACTAAAAAATCTTTGTCGAACATGTATGTCTGCAAACACAAATTTGACCCCTCTGTTTGCACTTTTAAGTTTATCCAGTAAAGAAGAGCCCTTAAACTCAATTTTGTATAAATGTACCTCCATTCAGGTATCAGAAACTGATGTTTTACCACAAAGTATTTGCAATAGTTGCTTGGAAAAATTAGCAATATGTTATTTGTATAGAGAACTTTGCTATGACACTCAAAATAGGTTACAGGAGTTATATGAAGCGCAGAAGCAAATAGTAAATTACATAGTCATTCAGAATAATAGTGATCAAGCTGAACTGGTACAGTGTATGATCTCCGTAAATGCACCAAATAATGATTTTCCAAAAGTATCAAATTTTACTGCACTGGACTTTCAGTATTCTACTGAAAATGGAGATGTCCCTGCAGAAACCAAAAATAGTGATGAATCTAAACctataatagaaaattttaaaacagaatCTGATTTTAAAGAGTCCTGTGATTTAGAAATTTTAGGCTGTGATAAACAAAATTCCTATGTTGAGAGTgatgaagataatttaaaagaaaacaatgttgaagaaattttagatttttcttgCCAAATTTGTACAAAGAAATTTTGTTCCAGATATTCTTTAAATAGACATTTAAAGACACATACTgatgcaaataatttaaaatgtcctATTTGCGTCAAGAAATTTACAAGAGCTACAGATGTAAAAAGGCATATGTCGGCACATACTGGAGAAAAACCATATTCTTGTACATTTTGCAGCCGCGCCTTTACACAATCAGGAACTTTGATGGCTCACCTTAGAAAACACAAAGACTTTCAAAAATCTGCTAAGAATAAATGTGAAAGGTCTTATTTGTGTTCAATATGTGGTAAATCATTTCGGCATTCTTCAACCCTTACAGTGCATATGAGAAGACATATTGGTGATAAACCATATAAATGTGATGTTTGTAAGGTTTGttttgtaTCAAGTGGAAGATTAAATTCACATAAAAGGGTCCATACTGGGGAGCGACCCTACATCTGTCACATTTGCAATAAAAGTTTTGGCCATTCAAGTGTGATGTCAAAGCATCTCAAAGCtcatgctaattataaaccgcATAAATGTACTTACTGTGCCAAACAGTTTTCTACAGCTTACTATTTAAACATACACACCAGgcAACATACTGGAGAAAAACCTCTAAAGTGCTCGACATGTAAGAAATCCTTTGCCTGTCCTAAAAATCTAAGACAACATGAACAAGTCCATATAAACAAGAAATCATATTTGTGCATTATCTGTGGAAAGGCGTTTAGACGAAGTCACCATCTGAAGAGTCACATGAAATTACAcgtaaaagtttaa
- Protein Sequence
- MNNQFLQKELKNLCRTCMSANTNLTPLFALLSLSSKEEPLNSILYKCTSIQVSETDVLPQSICNSCLEKLAICYLYRELCYDTQNRLQELYEAQKQIVNYIVIQNNSDQAELVQCMISVNAPNNDFPKVSNFTALDFQYSTENGDVPAETKNSDESKPIIENFKTESDFKESCDLEILGCDKQNSYVESDEDNLKENNVEEILDFSCQICTKKFCSRYSLNRHLKTHTDANNLKCPICVKKFTRATDVKRHMSAHTGEKPYSCTFCSRAFTQSGTLMAHLRKHKDFQKSAKNKCERSYLCSICGKSFRHSSTLTVHMRRHIGDKPYKCDVCKVCFVSSGRLNSHKRVHTGERPYICHICNKSFGHSSVMSKHLKAHANYKPHKCTYCAKQFSTAYYLNIHTRQHTGEKPLKCSTCKKSFACPKNLRQHEQVHINKKSYLCIICGKAFRRSHHLKSHMKLHVKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -