Pcer030511.1
Basic Information
- Insect
- Polydrusus cervinus
- Gene Symbol
- -
- Assembly
- GCA_935413225.1
- Location
- CAKXYS010000864.1:1427653-1429239[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 6.5e-06 0.00066 21.3 2.4 1 23 97 120 97 120 0.97 2 10 2.1e-06 0.00022 22.8 2.1 1 23 204 227 204 227 0.98 3 10 7.4e-05 0.0076 17.9 2.7 1 23 233 255 233 255 0.98 4 10 0.0008 0.082 14.7 2.2 1 23 261 283 261 283 0.98 5 10 0.0003 0.031 16.0 1.7 1 23 289 312 289 312 0.95 6 10 0.00038 0.039 15.7 0.2 1 23 320 342 320 342 0.98 7 10 1.1e-05 0.0012 20.5 3.9 1 23 348 370 348 370 0.96 8 10 0.00086 0.088 14.6 0.8 1 23 376 400 376 400 0.97 9 10 2.7e-05 0.0027 19.3 3.7 1 23 414 436 414 436 0.95 10 10 2.2e-05 0.0022 19.6 4.7 1 23 442 465 442 465 0.98
Sequence Information
- Coding Sequence
- atggttaaaagtaCAAATTTTTGCTGTATTTGCATAGAAACACATCATAGCTTGAAAAGTGTAACCGACAAAGATGAGAATGATGTACAATACTGCGAGAAATTAACTGCATGCGAACCAAATCAAAACTGGGATGACAACACGTTAAACATATGTGAGTCTTGTACAGATAAACTAAATGGGGCCTATGAATTCATCAATTTATGCAAGGAAAGCGAGACTTTACGGTCAAAGAAAGTACGTCAATTACAAGAAGAAATTGAAAGACAAAATGCCGAAAGCCAGAAGTTTACTTGTGATGTATGTCAGAAATCTTTTAAAcgtaaaagatttttaaaagtgcACATTACTCGTATACATTTGAAgaattctaaaagtaaaaataaagGTACAACTGATGAAAAGGAAAATGGGCACACATCTGATCCAAACATTCCTAGCAGTGTTAAATTAGaagaaacagttaaaaatgaaattaaggaTGAAATTTTAGAAGATGACTTCAGAGATAACTTCCTTGCAACAAATAATGATGAAAATTATTCCAGTGATGAGGAAGACCTTACAGAAAAACCCCGCAGACAACGAAGAACACAAAGACAAGAATCTTTTACCTGTGAATATTGTGGCAAACAATTCAACAGAAATCAACATTGGGCAGCTCATATACGATCAAAGCATACATTTGAAAAACCTTATAAATGTAAGCTTTGTGATGCTAGATTTGTTACATCACATAGTCTGCTTGTTCACAAACGTAACCACAACAATGAGAGACCTTACATTTGTAGTATTTGTGGTAAAGGTTTTGTATGCTCTGGAGATTTGTTCCATCACACTAAAATACATCTAAACAAAAAGGAATATCAATGTAATATTTGTAATAAGAGGTTTAATACAACAAGCATCTTGAGAACTCACAAGATTGTGAAGCATACGGAGCCTAAAGATTGGAAATATGTTTGTGCTCTTTGTGAGAGGAGGTTTCCCATTAACAGCGGGTTATCGCTCCATATGAAAAGACATACAGGTGTCAAAGATCATGCTTGTCATATTTGtggaaagaaattttttaataaatccgaAGTGactaaacatattttatccCACTCGAATCAAAAGCACTTTAAATGCACTTATTGTGAGGttaaagaatataaaaacaGGGAAGggctaaataaacatttaaaaattgtgcATGATGTGGGGAATTGGAAAGCCCCACAGCTCGAGAAAAAATTCCTATGTCCTCATTGccctaaaatgtttacttttaacaaTAAGTTGCAGAGACATCTTTTTACCCATTCTGGGGAGAAGCCTTTTAAGTGTCAGTATTGTGAAAAAAAGTTTAGTGataattattacagaaaaaGTCATATGAGGAAAGAACATAATATCCAATCTGAGGATGAGATTAAGTATGTGGAGTTGGTGGCAGTTCCACCAGGAATCAGTGATGTTGGTTAG
- Protein Sequence
- MVKSTNFCCICIETHHSLKSVTDKDENDVQYCEKLTACEPNQNWDDNTLNICESCTDKLNGAYEFINLCKESETLRSKKVRQLQEEIERQNAESQKFTCDVCQKSFKRKRFLKVHITRIHLKNSKSKNKGTTDEKENGHTSDPNIPSSVKLEETVKNEIKDEILEDDFRDNFLATNNDENYSSDEEDLTEKPRRQRRTQRQESFTCEYCGKQFNRNQHWAAHIRSKHTFEKPYKCKLCDARFVTSHSLLVHKRNHNNERPYICSICGKGFVCSGDLFHHTKIHLNKKEYQCNICNKRFNTTSILRTHKIVKHTEPKDWKYVCALCERRFPINSGLSLHMKRHTGVKDHACHICGKKFFNKSEVTKHILSHSNQKHFKCTYCEVKEYKNREGLNKHLKIVHDVGNWKAPQLEKKFLCPHCPKMFTFNNKLQRHLFTHSGEKPFKCQYCEKKFSDNYYRKSHMRKEHNIQSEDEIKYVELVAVPPGISDVG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00196607;
- 90% Identity
- -
- 80% Identity
- -