Pcer031383.1
Basic Information
- Insect
- Polydrusus cervinus
- Gene Symbol
- -
- Assembly
- GCA_935413225.1
- Location
- CAKXYS010000908.1:174437-176395[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.00014 0.015 17.0 0.5 3 23 24 46 23 46 0.89 2 16 1.1e-05 0.0011 20.6 0.5 1 23 64 89 64 89 0.95 3 16 0.0065 0.67 11.8 0.1 1 23 110 134 110 134 0.98 4 16 8.1e-05 0.0083 17.8 3.3 1 23 141 166 141 166 0.95 5 16 0.03 3.1 9.7 0.4 3 23 179 202 177 202 0.90 6 16 0.029 3 9.7 2.3 1 23 237 261 237 262 0.95 7 16 0.00084 0.086 14.6 3.7 1 23 268 293 268 293 0.96 8 16 1.1e-05 0.0011 20.6 1.4 3 23 306 329 305 329 0.91 9 16 0.018 1.9 10.4 1.2 1 19 365 385 365 390 0.93 10 16 0.00019 0.019 16.6 3.2 1 23 396 421 396 421 0.95 11 16 0.043 4.4 9.2 0.3 3 23 434 457 432 457 0.88 12 16 0.00042 0.043 15.6 2.9 1 23 462 485 462 485 0.95 13 16 0.45 46 6.0 4.7 1 23 491 513 491 513 0.93 14 16 0.04 4.1 9.3 1.2 5 21 519 535 516 536 0.90 15 16 0.0005 0.051 15.3 1.0 1 23 545 568 545 568 0.96 16 16 0.0072 0.74 11.7 3.9 1 21 577 599 577 601 0.95
Sequence Information
- Coding Sequence
- ATGAACTTAACCACAACCGACGAGGCTGACtcaacaacaaaacaaaagtcGATTAATAAAACCAACGAATGTTATTACGAAAACTGTGACAAATCATTTCGTACactatttgaattaaaaagacACATTGAGGCACATATTAGAGGTACCACTAAGTCAACTGCTAAAGAATTGATCAGTAAACAGATATACGCGTGTCAAGAAACGGGGTGTGGTAGAACGTTTACAAGAAAATGGTCGCTATCATTACATCAACGAAAGATACATAGCGACAGACAAAATATAGAGGAAAAGAAATATAGCAGTGAAAATGTCAATAGTACTTGGTATAAATGTGATGAAGGCAATTGTGGGGCAACGTTTGCGCTTTCTGATCGTCTAGAGGAACATAAACTTACACACCAGGTTATAGAACGGCCGTTTATATGTGACGTTGAAGAATGTGACAAGAGCTATAGAAACAACTGTCATTTAAACAGGCACAAAATGACTGCGCATTTTCTAGAACAAACTAAACAGCAACAGCAAGTTTCGTGTGGCATAGACGGATGTGCTAAAACTTATTGTAACAAATATGTTCTGAAGCAACACATTGACAAAGTCCATATGTTTGAGGTGGTACCGTCTCAATTAAGCGATGGTTTGGCAATCAAATGCGAACCTATCACTAAACCAGTAGTTAAGAAAAGGTCTGACATTGAAAAACGTCACAAATGCGAACAAGTTGGTTGTGACGCTGCGTTCATGCGCCCCTACAGACTGAAATACCACAAAATAACTCACCATGGTGGTGATAAACCGTTTAAATGCGATTTTCCGGGATGTAATCACAAATATACAAGTAATAGTCATTTGGTTAGACACAGACTAGTAAGTCATTTTCCAGATAAAGTCGCTCCAGATTTGCTAGCCTTTTGTGAGAAAAGAGGTTGCGGTaaagtctttaaaaataaatataaccttaaaaaacaTACAGCAATTAAACATGTAGATGTCCCACACTTGTGTCATGAGGTTAAGATTGAAGATTCCTTTAATGAAGAAGAAATTAAAGTTGAAgatagttttattgatgttgCTActaaaaacctttacaaatgTAGCGTACTAGGCTGCGTTGCCGCATTTACTCGAAGTTACCAGTTGAAGAACCATTGCTTGAATGTTCATGGTGAAGAGAGACCCTTTATATGTGATCATGACGGTTGCGACAAAAGCTACAAGAATGTATCACATTTGACTAGGCATAAAATTACAAGTCACTGTCCAATAGGAACGGGTTTAATGACGGAAGTTACCTGTGGAGTTGAGGGTTGTGCAAGAATTTTTTTCAGTAAGTACAGCTTAAGGAAACATACAGTTAGAAGCCATGGCAATCATTCCTTTTCATGTACAGAATGCGATGAAAAGttcaaaagtaaaaaacgaCTTCGCGCACATAAATATAAAGAACATCAAACTGACGCTCCGTTTAAGTGCGCTGTTTGTCCCAAAACTTTTGTATGTTTCCGTTCGTTCGAAAGACACTTAGGGCACCACAAGATTCACCAGTGCAATTGCGACAAAATGTTCGACAAGTGGTCAAAATTGGTGAAACATAGAAGTAGCGAGTGCCCTGCTCAAAGGGATCAACATACCTGCGAAACTTGTggaaaaggattttttttgcgGGATAATTTAGCGCTTCATCGTTTGCGTgtacataaaaacaaaactgaAATTAATATGTACAAGTGTCCGTTTCTAGATTGTAAGAAGTCGTACAAGTACAGTTGGAATCTGGACTATCACATTAAATGTCATAAACTACTCCCAGAAAAAACTGAAATTACAGATGATGAGAAAAGTGAAATAGTTTACCCCGAGAAACAagttaaagataagatgtatgGAAAAGTGGCAAGAAAATCTAAGTTAGGTAAAAATAGAAGAGATCGGAAAGTAAATAAGACCTCATGA
- Protein Sequence
- MNLTTTDEADSTTKQKSINKTNECYYENCDKSFRTLFELKRHIEAHIRGTTKSTAKELISKQIYACQETGCGRTFTRKWSLSLHQRKIHSDRQNIEEKKYSSENVNSTWYKCDEGNCGATFALSDRLEEHKLTHQVIERPFICDVEECDKSYRNNCHLNRHKMTAHFLEQTKQQQQVSCGIDGCAKTYCNKYVLKQHIDKVHMFEVVPSQLSDGLAIKCEPITKPVVKKRSDIEKRHKCEQVGCDAAFMRPYRLKYHKITHHGGDKPFKCDFPGCNHKYTSNSHLVRHRLVSHFPDKVAPDLLAFCEKRGCGKVFKNKYNLKKHTAIKHVDVPHLCHEVKIEDSFNEEEIKVEDSFIDVATKNLYKCSVLGCVAAFTRSYQLKNHCLNVHGEERPFICDHDGCDKSYKNVSHLTRHKITSHCPIGTGLMTEVTCGVEGCARIFFSKYSLRKHTVRSHGNHSFSCTECDEKFKSKKRLRAHKYKEHQTDAPFKCAVCPKTFVCFRSFERHLGHHKIHQCNCDKMFDKWSKLVKHRSSECPAQRDQHTCETCGKGFFLRDNLALHRLRVHKNKTEINMYKCPFLDCKKSYKYSWNLDYHIKCHKLLPEKTEITDDEKSEIVYPEKQVKDKMYGKVARKSKLGKNRRDRKVNKTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -