Pcer031384.1
Basic Information
- Insect
- Polydrusus cervinus
- Gene Symbol
- -
- Assembly
- GCA_935413225.1
- Location
- CAKXYS010000908.1:181229-183613[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.1e-05 0.0042 18.7 2.0 2 23 23 46 22 46 0.94 2 13 0.034 3.5 9.5 0.1 1 23 57 82 57 82 0.97 3 13 0.0022 0.23 13.3 5.1 1 23 88 113 88 113 0.97 4 13 0.00056 0.058 15.2 0.7 2 23 124 146 123 146 0.95 5 13 0.0029 0.29 12.9 0.4 1 23 168 193 168 193 0.92 6 13 0.00023 0.023 16.4 1.2 1 23 199 224 199 224 0.95 7 13 0.00023 0.023 16.4 0.1 3 23 237 260 236 260 0.90 8 13 3.6e-05 0.0037 18.9 0.8 1 21 265 285 265 288 0.90 9 13 0.00038 0.039 15.7 5.1 1 23 294 316 294 316 0.99 10 13 0.092 9.5 8.2 0.4 5 22 322 339 319 339 0.93 11 13 0.003 0.31 12.9 0.7 1 23 348 371 348 371 0.92 12 13 1.3e-05 0.0013 20.3 1.1 2 23 381 405 380 405 0.97 13 13 7.4e-05 0.0076 17.9 2.8 2 23 413 436 412 437 0.93
Sequence Information
- Coding Sequence
- atGAGCATAAGTACATCTAATAAACAGAaaacagaactcgaacaaaccCAAGTACAAAGACTTTTGAAATGTGACCAAGACGGTTGTAATAAATCATTTCCAAGAAGACACCAATTGAAAAAGCATCAAGAAGCACATTTAAAAGGGACACAAAGACCCGTAAATCTGTATAGATGCGACGAAGCGGAATGTGAAGCAAAGTTTTATTTACCCGAAAGACTAAGAAAACACCAACTTGTTGATCATAATGGAGAAAGACCTTTTCAGTGTGATTTCGAAGGATGCGACAAAAGATATAAAAGTGACCATCATTTAAAAAGGCATAAAGCCACAAATCATTCTAACAAAGCATGTACTTCAGAAGAGGTGATGTGCAAAGGTTGTGGTAATActtattgtaataaatatgtTCTCAAACAACACATGGCCGTTGCTCATGTAGAGCATGATGATGCTGTTATGCCTAAAAGTACTAAGAAAAAAtcggaatttgaaaaaaagCATATATGTGACGAACCCGGGTGTAATGCAGCGTTTACACGACCATATCGATTGAAGAATCATAAACTAACAGTCCATGGTAATGATAAACCGTTTGAATGTGAATATCCAGGTTGtgagaaaaaatatacaaatgaaTCGCATTTGGCGAGGCATAAGACTACCATTCATTATCCCAATGAAATTAATACTGAAAAAGCAGTCATTTGCGGAGAGGAAGGATGTGGACTAATTTTTTCCAGCAAGTATTACCTTAAGAGACATATAACTAGAGTTCACACACTCCTTCCATTTTCGTGTTCCGATTGCGGAGAGAAATTCAAACGGAAGAGTCGATTGCAGGTTCATAAGGTAGAAGTTCACAATAAAGAAGCGTCATTCAAATGCAATTCTTGCTCtaaaatgtttgtaaatttacatctatacaataaacatttaaaaactcaCAAAACTTACCAATGCGATTGCGAGAAGACATTTGATAAGTGGACAAAATTGTTGGAACATAGAAGAAGTGAATGCAGTGTCAAGCCAAAAGAATACAAGTGTGTAATTTGCAACAGAACGTTCGGTTTAAAGGCTAAATTAACGCAGCATTCCTTGTATGTCCATGTATCCGACAGTCAGCTTGATCTTATaaaatgtccttatttgaaCTGTAATCGTtcatacaaatataaaagtaatttgaagGGTCATATCAGGACGTATCATGAGAATATTTTCGATCATGTCAAGTGCACAGAGAAAAATTGCGATAAAGTATATAAATCAAATAGAAATCTGAAACAACATTTGAGAGCACATCATGGTTTGCCGGCTAAAGTCAGGAAGCCTAGGAGGCCCAGAAAAGATAAGGGAATACCTAAAACGTCCATGGCGTCATTAATTTCTGGAGTCGAAGTCACTGCTGAAGAAAATTATAGGAATACCATGGAAAATATAGATGAAAACTTAAATGCTTCGGAGATAGTTGTACATCGTTTAGACGAGAATGGATGTGGGAGAAAATTTAAGAATGTTATGTACAAGACTGAAGATCAAAAAAGTTGTGAAAGAATCATCAACAATACTAAAATTAAGGAAGGGCAAGCTGAAGGAAGAAGTACAAACATTAATTCTTTGGACGATAATCAAAAAACTACGTCTGACATTGTCGAGTCATCACCTATGTCTAATATTGTTACTTCTACTCCTGAGGAATTTTCTGAAAATCTTCATGAAGTAGTTAGCATGGATATAGACATTGAATGTTCAAAACCCCCCACTGCCTtagatttaaataagttaaaagaaCCAACAAGAGGCTTGAACGATAATGTGAAGAATCAAAATAATTCAGATAGTATTAACGCTATAAACATTGAAGATTGTGGCAAGAACATTGAAGAAATGAATAAGGGTCACAGTAAAACATCAGATACTGTAGCTATAGCATGTAATAGCAATGATATGGTAGTTGACATGGTGGTTGATCCTAAActttcacaaaatttcgttcTAATAGAAATACCTTCAAATGAAACCATAAGAGAACTTGAGAATggtgaaataaataataccaaGGGTGGAAACGGTCTCAACTACAAACCAGTTACAGTTGCTGGTGTCCAGAATACCCAAGAATCTATAGGTGATGTAAACGCTTCAAGATACACTGCAGATGATACGCCTAATGACAACTTATTAAGTGTAAATATGGTCCCTGTCCTTTTAAATTCTAGTCCGAATAGTAGTACCAATGGGGtagttttatttgatttttccgACTTTGACACTACTAAGCTGAGTAATACtataactattaaaaataaagcaaatgATGAAGAACAAACTGCGGCTAAGAATCTTCATGATTGTAACAATGAATATAAGATAAAATAA
- Protein Sequence
- MSISTSNKQKTELEQTQVQRLLKCDQDGCNKSFPRRHQLKKHQEAHLKGTQRPVNLYRCDEAECEAKFYLPERLRKHQLVDHNGERPFQCDFEGCDKRYKSDHHLKRHKATNHSNKACTSEEVMCKGCGNTYCNKYVLKQHMAVAHVEHDDAVMPKSTKKKSEFEKKHICDEPGCNAAFTRPYRLKNHKLTVHGNDKPFECEYPGCEKKYTNESHLARHKTTIHYPNEINTEKAVICGEEGCGLIFSSKYYLKRHITRVHTLLPFSCSDCGEKFKRKSRLQVHKVEVHNKEASFKCNSCSKMFVNLHLYNKHLKTHKTYQCDCEKTFDKWTKLLEHRRSECSVKPKEYKCVICNRTFGLKAKLTQHSLYVHVSDSQLDLIKCPYLNCNRSYKYKSNLKGHIRTYHENIFDHVKCTEKNCDKVYKSNRNLKQHLRAHHGLPAKVRKPRRPRKDKGIPKTSMASLISGVEVTAEENYRNTMENIDENLNASEIVVHRLDENGCGRKFKNVMYKTEDQKSCERIINNTKIKEGQAEGRSTNINSLDDNQKTTSDIVESSPMSNIVTSTPEEFSENLHEVVSMDIDIECSKPPTALDLNKLKEPTRGLNDNVKNQNNSDSINAINIEDCGKNIEEMNKGHSKTSDTVAIACNSNDMVVDMVVDPKLSQNFVLIEIPSNETIRELENGEINNTKGGNGLNYKPVTVAGVQNTQESIGDVNASRYTADDTPNDNLLSVNMVPVLLNSSPNSSTNGVVLFDFSDFDTTKLSNTITIKNKANDEEQTAAKNLHDCNNEYKIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -