Basic Information

Insect: Polydrusus cervinus
Gene Symbol: PRDM13
Assembly: GCA_935413225.1
Location: CAKXYS010000454.1:86205-91483[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0044 0.45 12.4 0.4 1 21 271 291 271 292 0.93

2 11 5.2e-06 0.00054 21.6 0.9 3 23 340 361 339 361 0.95

3 11 6.5e-06 0.00067 21.3 0.3 1 23 374 396 374 396 0.98

4 11 1.8e-05 0.0018 19.9 0.6 2 23 403 424 402 424 0.97

5 11 5.6e-07 5.8e-05 24.6 3.0 1 23 429 451 429 451 0.98

6 11 2.8e-06 0.00029 22.4 3.2 1 23 457 479 457 479 0.97

7 11 3.3e-07 3.4e-05 25.3 0.9 1 23 485 507 485 507 0.98

8 11 0.00044 0.045 15.5 1.1 1 23 513 535 513 535 0.97

9 11 4.1e-06 0.00042 21.9 1.9 1 23 541 563 541 563 0.98

10 11 0.00053 0.054 15.2 0.5 1 23 569 591 569 591 0.97

11 11 0.0024 0.24 13.2 3.0 1 23 597 620 597 620 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0044	0.45	12.4	0.4	1	21	271	291	271	292	0.93
2	11	5.2e-06	0.00054	21.6	0.9	3	23	340	361	339	361	0.95
3	11	6.5e-06	0.00067	21.3	0.3	1	23	374	396	374	396	0.98
4	11	1.8e-05	0.0018	19.9	0.6	2	23	403	424	402	424	0.97
5	11	5.6e-07	5.8e-05	24.6	3.0	1	23	429	451	429	451	0.98
6	11	2.8e-06	0.00029	22.4	3.2	1	23	457	479	457	479	0.97
7	11	3.3e-07	3.4e-05	25.3	0.9	1	23	485	507	485	507	0.98
8	11	0.00044	0.045	15.5	1.1	1	23	513	535	513	535	0.97
9	11	4.1e-06	0.00042	21.9	1.9	1	23	541	563	541	563	0.98
10	11	0.00053	0.054	15.2	0.5	1	23	569	591	569	591	0.97
11	11	0.0024	0.24	13.2	3.0	1	23	597	620	597	620	0.96

Sequence Information

Coding Sequence: ATGAAACTAGATAAAGTTTGCAGGACATGCTTGTTTGAAAAGGCCAACTTAAAGCCCCTTTTTGAAGCTTGTATACCGAACATTATCATGTCATTTGCATCAGTACAGATAATGCAAGGTGATGGTTTTCCACAACATATTTGTACACAATGCATCAGAGACGCCAGTAAAGCATATTCATTTAAGCAAACCTGTGAAAAATCTGATGCCAAATTAAGAAACTATATTAACAACATAAACTTTAACAGCGAAATAAGCCAAATATGCGATTTATCATCTCAAATGCCTAATGGCCATAACATTATACCTATAGACAATATTATTTCAAACTGTAACAGTCATAATCTTATGAACAGTTGCAGTGTTTTGACAAATAGTACTTTAGTACCCAACAGCAACATGGATATGATGTCCGGTACGGATCCTATGGGTTCTTCTTTGGGCACATTGGTTAACGCCATTAATACTTCCATAGACACCATGGAAAATCACGGATTAAATGAAAACAACCTTATTGATATTGATACTAACGTAATGAACAGTATTAATGCTGTAAggaataatttgtttaatagtAACGAGGTTTTACAGCAGAGCTCgttttttcaagatatttttaatgatccCGATAATCAGTCTTTGGTTGATAACTTTACCAATCATCAAGGTAACACAGTTGTGTCAGATCTAGCTGAGAGTTTGCAAACTATAGCGGAGCAGTGTTTACCTGAATCTTGGGATAACGATAACCAGATATGTCAAATAAATACGGAAGACACTTCTAGTGGCTTTCCACTAATGGAGCCCATATATAAATGCCAGTTTTGTGGAGAAACTTTTAAAGatggttGGTACCTTGATGAGCACACAAAAAGTCAAGTGTGTCAAGAGAAATACTTCAGTACAAATATCACAAATGAGTTGACGAAAAGTATGTTACTGGAATACAGTTTCGACACAAATTCAAAGGATAATTTTATGTTTGAGAATATAGAACCTGCCAATCAAAATCTGCTCTGTGATatTTGTGATAGGACCTTTACAGATCAAAAGTATctgaaaaaacatttaaaagatATACATTTTATTGACAAAACTTGTGTGAAAGATGAGAAAAAGTACCCTTGCACCGTATGTGGTAAAAGaTATACTTCTAAAAACGTATTGGTCATTCATATGCGTAATCACACAGGGGAAAGACCCCTTAAATGTGAAATTTGCTCTCGTACCTTTGCTTTGCCCAGCAGCCTTcagaaacacaaaaaaatccacAAGGAAAGACAGTATGAGTGTCATATATGCAGAAAAAAGTTTAATCAACAGTCCAATTTAAATACTCATTTATTGGTACATTCTGGTGAGAAACCTCATGTTTGTACAACTTGTGGGAAAAGATTTTCCACTAACACCAACTTGGAAATTCATAAAAGACAGCATACCGGGATCAGGCCATTTGTATGCACATTTTGTGATAAAGCTTTTATTTcaaGTACCCAACTCAAAAAACACATGATGGTTCATACTGGCGAGAAACCTTACTCGTGTTGGATATGTGGGCAatcttttagaagaaaagaaaCTAGAGATACTCACGCCAGATACCACACTGGAGAGAGACCGTACAGTTGTAAAATTTGTGAAAAGAAGTTCATAGCCGCGTCTCACCTTAGGGATCACATGAAAAGTCATACCACTGACAGAAAGTTCGACTGTATGATATGCCAGAAAAAATTTCCTTCTTTGAAGGGTGTCAAGAGTCACATCATGACGCACACGGGACAAAAACCCTTTACGTGCGGTTTTTGTGGAAAGTCATACACTCTAAGAAAAGCCTATAAGGTTCACTTAAAGGCCTGTcataattga
Protein Sequence: MKLDKVCRTCLFEKANLKPLFEACIPNIIMSFASVQIMQGDGFPQHICTQCIRDASKAYSFKQTCEKSDAKLRNYINNINFNSEISQICDLSSQMPNGHNIIPIDNIISNCNSHNLMNSCSVLTNSTLVPNSNMDMMSGTDPMGSSLGTLVNAINTSIDTMENHGLNENNLIDIDTNVMNSINAVRNNLFNSNEVLQQSSFFQDIFNDPDNQSLVDNFTNHQGNTVVSDLAESLQTIAEQCLPESWDNDNQICQINTEDTSSGFPLMEPIYKCQFCGETFKDGWYLDEHTKSQVCQEKYFSTNITNELTKSMLLEYSFDTNSKDNFMFENIEPANQNLLCDICDRTFTDQKYLKKHLKDIHFIDKTCVKDEKKYPCTVCGKRYTSKNVLVIHMRNHTGERPLKCEICSRTFALPSSLQKHKKIHKERQYECHICRKKFNQQSNLNTHLLVHSGEKPHVCTTCGKRFSTNTNLEIHKRQHTGIRPFVCTFCDKAFISSTQLKKHMMVHTGEKPYSCWICGQSFRRKETRDTHARYHTGERPYSCKICEKKFIAASHLRDHMKSHTTDRKFDCMICQKKFPSLKGVKSHIMTHTGQKPFTCGFCGKSYTLRKAYKVHLKACHN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00196578;
90% Identity: iTF_00196578;
80% Identity: -