Pcer036021.1
Basic Information
- Insect
- Polydrusus cervinus
- Gene Symbol
- -
- Assembly
- GCA_935413225.1
- Location
- CAKXYS010001160.1:66124-69321[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.13 14 7.7 0.9 1 22 9 30 9 31 0.80 2 23 6.7 6.8e+02 2.3 1.6 2 22 38 60 37 62 0.73 3 23 0.00058 0.059 15.1 2.0 1 23 68 91 68 91 0.96 4 23 0.003 0.31 12.9 0.9 1 22 97 118 97 120 0.91 5 23 0.01 1.1 11.2 1.0 3 23 133 154 132 154 0.94 6 23 3.1e-05 0.0032 19.1 0.2 1 23 165 187 165 187 0.97 7 23 0.022 2.3 10.1 2.3 1 23 193 215 193 215 0.94 8 23 0.00031 0.032 16.0 0.5 1 23 221 243 221 243 0.98 9 23 0.0048 0.49 12.2 1.4 1 21 249 269 249 270 0.95 10 23 0.43 44 6.1 0.5 1 23 305 327 305 327 0.89 11 23 0.00086 0.088 14.6 0.7 1 23 342 364 342 364 0.98 12 23 0.21 22 7.1 3.5 2 23 367 388 366 388 0.95 13 23 7.2 7.4e+02 2.2 0.2 3 23 396 417 395 417 0.90 14 23 0.0025 0.25 13.1 0.9 2 23 533 554 532 554 0.96 15 23 0.04 4.1 9.3 0.1 1 23 572 594 572 594 0.97 16 23 0.12 13 7.8 0.0 1 23 596 618 596 618 0.96 17 23 0.014 1.5 10.7 0.1 2 23 658 680 657 680 0.96 18 23 0.021 2.2 10.2 0.6 1 23 686 709 686 709 0.94 19 23 0.028 2.8 9.8 0.1 2 21 721 740 720 741 0.92 20 23 0.00012 0.012 17.3 1.8 1 23 756 778 756 778 0.98 21 23 0.013 1.3 10.9 0.4 1 23 784 806 784 806 0.90 22 23 2.4e-06 0.00025 22.6 2.0 1 23 812 834 812 834 0.97 23 23 1.7e-05 0.0017 19.9 0.6 1 21 844 864 844 865 0.95
Sequence Information
- Coding Sequence
- ATGTCCCATGTTGCTTCCCATTCCTTTCAGTGTCCTGTATGTCAAGAAAAGTTCTCCAAAGCTATTTTTCTTGGATGTCACATGGCGGAACATAACGAGGATGGCACCGTTTCCTGCCCTCTTTGTCAGTACCAATACAGTACTCCATATGGTAACATCCTGCAGGCACATATCAAAAGAAGACACCTCAAAATGGGCTGTCACTATTGTGATCATTGTGGCGCCTCCTACTACAAGAAAAAGCAGCTAGTGGAACATATAAATGTCGTCCATCTTAAGCAGGAACCCTATAAGTGTGTGGTGTGTGAAAAAGAATTCATAATGAAGACTAGTTTGTACAAGCATCAAGTTGATAAACATAAAGTGCTTGTGGAAGGCGATATACCTTCAAATTATTGCCTTCTGTGCAAAAGGACCTTTCAAAAAGTATCCTCGCTCGAGAAACATTTAGAAGTGAGGCATAGTcaggttaaatgtaaaaaagaagaaacatttgTTTGCGACTTGTGCGGAAAAGCCTTTGGGTATAGTCAGAGTCTTAAGGTCCATTTAAAAGGTCATGCTGGCATACGACCTCATAAATGCTCGTTTTGTCCCAAAACCTTTAAACTTAATTCTCAAAAACTTGACCATGAGGCTGTACACACCAATTTAAGGCCATTTTCGTGCGAGCAGTGCGGACAAAGGTTCAAACTTATAAAGGCCTTAAGGGTACATTTGAAAATCCACCAAGTGGAAAAAGATTTCATTTGTAATTTTTGTGAAAGGGGATATAATCGAGCAGATCACTTTAGATTACACCAAAAAAGTTGTAGAAAGAATCCAGTTAATGTCAGAAGATTCGACGATATTGAATCTAAGAAACGAGGGAAAGGAcgaccaaaaaaagtaaaacagcCCGACGAACCGGAATTTGCATGCCCAGAATGTCCGAAGATATCTGCATCTCAACGATTAGCAAACCTACACAAGCATTTTCATTACGAAGAGTCGTCTTACATCTTTGACAAATCAACACGTATTTTTACTTGCAATTTTTGCTCGAAAGTCTTTGTTAAAAAGGATGTAATGGAAGAGCATATGGACTCCCATGCTATGAGCTGCAAGCAGTGTCACCAATGCTTCCAGAGCCCATTTTTTCTTGGTTTGCATATGGCCGAACATAACTCTAAAGAGCAAGTTGCTTGCCCTCTTTGTACCTACCGCGGAACGTCAGTTTTACCgctaaagaaacatatttttaacacCCATTTTGGAGATGATTCAGATGAAATTAAGTCTGAAGAATTAAAGATAGAAGATGACGATGATAGGCccttaaaacccaaaaaaactattgctaaaaaaactaaatcggAGGAGgaggatgatgatgatgataatgatGATGATTTTGATGATGACGACGACTATTGGCCTGAAAAGCCTAAAAAAATtggcaccaaaaaaaataaattaaatgataacGATTATACtcatgaaaagaaaaaaaaatatacctacaaaaaAGCTAACGTAAGCAAAAAATTATTGGATAGACTTAGAAGAGAAAAACAGACTTTAAAGAAAAGGGCACAAAGAGCGAAGACACAACTAATATGCAAAATATGTAAGGTTAAATACCCTACCTTTAAAGATCTGCGTAACCATAGGAAAGTGCATAAAGCCGAAAGGCAGGAATCTTTCTACACTTACAATCCCCTACGAAAATCTTACACTTGTGACACTTGTTTACAAGAGTTTATTCAAGAGGATGATGTAAAACAACACGCTGAAAGCCACACTTATTCATGCACCATTTGCCCTGCAATATACAAAAAAGCCTTGCTCCTAGGCTTGCACATGGCTGAGCATAACGAGGAAGCAAAATTGAGTTGCCCGTTATGCAATCATGAGTATAAGTCgcattgcaaaagtagactcATAAGACATATTAAACAGACTCACCAAAAAGAAAAACCTAAAACAAGCCAATGTGAGTATTGTGGATCCTCTTACTTATCAAAGAGCATGCTTGAAGATCATATTAGCGTTGTACATTTACAAAATGAGCCTTTCAAGTGCATTGTTTGTGGCAATTCATTTACCTTACAGTCGAGTATGCGTATTCATCAAATAAATAAGCATAGAGTGGTGGATGAAAGCGAACTATCATCCACCTATTGTTTGCTCTGTAAAATGGAATTCAAAAAGCCAGAATCCCTGGCAAAACACTTGGAGATGAAACGTTGTATACCTATACCAAGAGTGGAAAGGCAAGGTCATTTCGTTTGTGACCTTTGTGGAAAAGAATTTCGATTTTACAAGTCATTTAACCTCCATCAACGAGAGCATGCCGGCGATAAGCCTTTCAAATGCTCGTACTGCCCAAAGGCGTTTGTAATTAACTCGAAAAGATTAGCTCATGAGGTATCGCATACAGATTTAAGACCTTTCTCCTGCGAGACCTGTGGCCAAAGTTACAAGACTTGGAAGCATTTACGAAGACATTTGGCTGTTCACAATAGTGGAAATAACCCTAACGTGACATATAATTGTTCTTCTTGTTATAAATCTTTTTCTACGAAGGATACTTTGAGGGCGCACATAAGAATTTGTGCAAGGCCTAAACCACCCCAGTGTTATTGA
- Protein Sequence
- MSHVASHSFQCPVCQEKFSKAIFLGCHMAEHNEDGTVSCPLCQYQYSTPYGNILQAHIKRRHLKMGCHYCDHCGASYYKKKQLVEHINVVHLKQEPYKCVVCEKEFIMKTSLYKHQVDKHKVLVEGDIPSNYCLLCKRTFQKVSSLEKHLEVRHSQVKCKKEETFVCDLCGKAFGYSQSLKVHLKGHAGIRPHKCSFCPKTFKLNSQKLDHEAVHTNLRPFSCEQCGQRFKLIKALRVHLKIHQVEKDFICNFCERGYNRADHFRLHQKSCRKNPVNVRRFDDIESKKRGKGRPKKVKQPDEPEFACPECPKISASQRLANLHKHFHYEESSYIFDKSTRIFTCNFCSKVFVKKDVMEEHMDSHAMSCKQCHQCFQSPFFLGLHMAEHNSKEQVACPLCTYRGTSVLPLKKHIFNTHFGDDSDEIKSEELKIEDDDDRPLKPKKTIAKKTKSEEEDDDDDNDDDFDDDDDYWPEKPKKIGTKKNKLNDNDYTHEKKKKYTYKKANVSKKLLDRLRREKQTLKKRAQRAKTQLICKICKVKYPTFKDLRNHRKVHKAERQESFYTYNPLRKSYTCDTCLQEFIQEDDVKQHAESHTYSCTICPAIYKKALLLGLHMAEHNEEAKLSCPLCNHEYKSHCKSRLIRHIKQTHQKEKPKTSQCEYCGSSYLSKSMLEDHISVVHLQNEPFKCIVCGNSFTLQSSMRIHQINKHRVVDESELSSTYCLLCKMEFKKPESLAKHLEMKRCIPIPRVERQGHFVCDLCGKEFRFYKSFNLHQREHAGDKPFKCSYCPKAFVINSKRLAHEVSHTDLRPFSCETCGQSYKTWKHLRRHLAVHNSGNNPNVTYNCSSCYKSFSTKDTLRAHIRICARPKPPQCY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -