Basic Information

Insect: Polydrusus cervinus
Gene Symbol: -
Assembly: GCA_935413225.1
Location: CAKXYS010000128.1:46786-63727[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.001 0.11 14.3 2.8 2 23 294 315 293 315 0.97

2 17 0.0052 0.54 12.1 0.6 2 23 319 339 318 339 0.96

3 17 0.036 3.7 9.5 3.2 3 22 346 365 344 367 0.88

4 17 1.6e-05 0.0016 20.0 3.5 2 23 374 396 373 396 0.96

5 17 5.5e-05 0.0057 18.3 1.9 1 23 402 425 402 425 0.98

6 17 3e-05 0.0031 19.2 2.5 1 23 431 453 431 453 0.96

7 17 2.5e-05 0.0026 19.4 1.6 1 23 459 482 459 482 0.98

8 17 0.012 1.2 11.0 0.0 3 23 492 512 491 512 0.96

9 17 0.0068 0.7 11.8 0.1 2 23 516 538 515 538 0.96

10 17 1.6 1.6e+02 4.3 2.5 2 23 782 802 781 802 0.95

11 17 0.15 15 7.5 1.7 2 23 808 829 807 829 0.91

12 17 0.0032 0.33 12.8 7.1 1 23 836 859 836 859 0.98

13 17 0.0014 0.15 13.9 4.5 1 23 865 887 865 888 0.96

14 17 1.4e-06 0.00014 23.4 1.5 1 23 894 916 894 916 0.97

15 17 0.00012 0.013 17.2 1.6 1 23 922 945 922 945 0.96

16 17 0.0022 0.22 13.3 0.1 3 23 955 975 954 975 0.97

17 17 0.0017 0.18 13.6 1.7 2 23 979 1001 978 1001 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.001	0.11	14.3	2.8	2	23	294	315	293	315	0.97
2	17	0.0052	0.54	12.1	0.6	2	23	319	339	318	339	0.96
3	17	0.036	3.7	9.5	3.2	3	22	346	365	344	367	0.88
4	17	1.6e-05	0.0016	20.0	3.5	2	23	374	396	373	396	0.96
5	17	5.5e-05	0.0057	18.3	1.9	1	23	402	425	402	425	0.98
6	17	3e-05	0.0031	19.2	2.5	1	23	431	453	431	453	0.96
7	17	2.5e-05	0.0026	19.4	1.6	1	23	459	482	459	482	0.98
8	17	0.012	1.2	11.0	0.0	3	23	492	512	491	512	0.96
9	17	0.0068	0.7	11.8	0.1	2	23	516	538	515	538	0.96
10	17	1.6	1.6e+02	4.3	2.5	2	23	782	802	781	802	0.95
11	17	0.15	15	7.5	1.7	2	23	808	829	807	829	0.91
12	17	0.0032	0.33	12.8	7.1	1	23	836	859	836	859	0.98
13	17	0.0014	0.15	13.9	4.5	1	23	865	887	865	888	0.96
14	17	1.4e-06	0.00014	23.4	1.5	1	23	894	916	894	916	0.97
15	17	0.00012	0.013	17.2	1.6	1	23	922	945	922	945	0.96
16	17	0.0022	0.22	13.3	0.1	3	23	955	975	954	975	0.97
17	17	0.0017	0.18	13.6	1.7	2	23	979	1001	978	1001	0.95

Sequence Information

Coding Sequence: atgagCGAATTACAAAACGCTGTTAAAAATTTGGAGATATGCAGACTGTGTTTAAACCTTACTGTtgcaaaagtaaacatttttacaGAAGATTTTGCAAAAATGGTTGAAATACTTACATCATTAAAGattaaaccTGATGATAGTCTTCCAAAAGTTTCGTGCCTAAAATGCGCTAGAGATGTAAAAACAGCCTTTTTAATAAGGAGGCGTATAATTCAATCTTACAGAgcatttaataacaaaataaatagatCAGGATCAAATAATAGCAGGTCAAGTACACCTAGCTCTTTTGTAAGGCCAAGTATTAATAATGCTATCATTATACCTAGTACTAGCACACATGTTACTCCAGCAAGTACAAGTTCTGAAAAGCCAtcggaaatattaaaaactctCCTTGAGAAGAATAATTCCTCAAATAATCTAGAGTCTGACATTGAAGAATTAGACAATGATATTGATAGTACTGATgataatttttctgaaattaaaGGCGATAATGAAACTACTAAGCCTATTAAACAGATATCACAATTATTAAACATTGGCAAGGATAATAAAATCGAGAGCATTGTAAGAGAATCAAATGATTCACGTCTTTTACCAAATATTGACACTAAAGTGAATATCTGCAAAGACAGTCCTCTATCGGCTCGAAAAGTTaaacaaattcaaaatcttaaactagaaattaacatgaaataTATGGAAAAGCTTAAATCTACACAAAAAGTTAACGCTTGGAAATTGATGAACAAAAGAGATCAAGTCAATATTCTTAATTGGATGGATAGGAAAAAGATTAATGCAAAATGTATTGCAAGTAGGCTTGCTACCTCTACCCAGACAAAAAAGAAAGAGCCTTTGAAGATGTACTGCAATCAGTGTCAGATCAAATTTACCAACAGAGTAACCTTCAAAAACCACATGACGaggcataaaaataaaacatgtcCGATATGTGACAAGCAAATCAGAAGTGCATACCTTAAGAAGCATATGACATTGCATGAAGACGCGCCAGTAATATGTGAAATTTGTGGTCAAACATGCAAAAATCCCTGTAGTTTACGGATGCATTTCttttattatcataaaaatCCGAACTTCTGTGTTTGTGAGGATTGTGGGAGATCGTTTAGGACTAAGACCAAGCTTTTATACCATCAAAGGAAAGATCACACTAAAGAAAGGAATTTTAAATGTGAAACCTGTGGTAAAGCATTCTTCCTTAAAAtgtaTCTCACGAAACATATTAATATGAAGCATATGAAGTTGCGACCGCATATCTGCGAATATTGTGGCAAGGGATTTTCTGGCAAACACGCACTGCGTACTCACGTGCGACAACACACAAATGAAGCCCCTTATCAATGCAATTTTTGTGGCGAGAGGTTTAGACAACGCGTATCATTGCGAGGGCATCTTAAAAGTCGTCATAAAATTGAAGAGGAAAACAAGGCTTTCTGTGACATTTGTGGTAAAGGATTCGCCTCTATTGTTGCATTGGATGTACATTCCCGCCTGCATAAAGAGATTAAATGTCCCTGGTGCTCTGATACTTTCGCTGAAAAGGAATATCTTGAGCAACACATCAATTCAGCTcattcaaatgcaaaagaaGACGCTGTCGCTGATGATGGGGAATTTAAATGGATGAATTTagaagattttgccaaaatgaTTAAATTACTGACCAACATACAGGTTGAAATAACAGGTGATTTACCAAAAGTAGCCTGCATTTCCTGTACAAGGAAAGTTAAAGCAGCTatggttgtaagaaaacaaattataagATCACATAGGACATTACTAGAGGAGGCACTAGCTAAAAAAAACATGACTTACATGTCAAATTCTAGTCATACTAAAGCCTTATATGATAGCGGTTCCCACACTCCTTTGGAAATTAAGAGGTCTGAGAGCAAAATTGAAGAAGATGGATTTGTTGCTTATGGAAACTTACAAACAGatgttaaaaatgattttaaaatggagAATGAGAAATGTATTATTGCCAATGAACAAATAAGCAATCagttaaatgaaaaaaatgttcaaagTTTTTCCgcttctataaataaaaatgaaatctcaattgttaaaataataaagccaAACTGTGAGCAGACTAAAGTAACAAGGATCCCAGcacttttaaataatacaagTACCCAGTTAAGAAGAGCTCCTAAACGTCAACTATTAAACTTtgctttaaataaatcaaatatacAGTTACCAAAAAGACCTAAcccaaaaattatattacccAAGAGGCCATGTCCTAAGCTTACACCATCACGCCCAAAGATTGATCCTTTAAGTCCTGTATCATGCAAAGTATGTCAAAAGACAATACTACATACCAACATGAAACGACATTTGGAAACACATGATAACAGAATGGTAACATGTCATCTTTGTGGAAAGATTACTAAAAATACAACGTTACGTGCtcacatattttattttcataaatgcAAGGCAGATGAATATGTCTGTGATCAGTGTGGGCGTCATTTTAGATATAGACATAGATTTAACCTTCACATGAAAAAGTCTCATGGTGGAACTAGAGACTTTGAATGCACAACTTGTGGAAGGAGATTCTTTGAAAGAAAATTCTTAACTACACATATTAACAGCCATCACAAGAAAATCCGTCCTTTTATCTGCGATTACTGTGGTAAAGATTTTTCAAGTAAACATGCATTAAATGTTCATTTACGCCAACATACAGAAAGTTCCCCTTATAGTTGTGACAGTTGCGGTCTTAAATTCAAACAAAAAGTATCTTTGAAAACTCACCGCAAGCAAGCCCATGATATTTGCGAAGAGGAAACTGTATTTTGTGAAGTATGTGGAAAAGGTTTTGCGTCCACAGTGGCTTTAGCTAGTCATTTTAGACTCCATGagagaaaaaaatgtatgcactgTTCAGAAGTATTTGTCAGAGATGACTATTTGGAGAGGCATATAAAAGACAAACATGGAACATAA
Protein Sequence: MSELQNAVKNLEICRLCLNLTVAKVNIFTEDFAKMVEILTSLKIKPDDSLPKVSCLKCARDVKTAFLIRRRIIQSYRAFNNKINRSGSNNSRSSTPSSFVRPSINNAIIIPSTSTHVTPASTSSEKPSEILKTLLEKNNSSNNLESDIEELDNDIDSTDDNFSEIKGDNETTKPIKQISQLLNIGKDNKIESIVRESNDSRLLPNIDTKVNICKDSPLSARKVKQIQNLKLEINMKYMEKLKSTQKVNAWKLMNKRDQVNILNWMDRKKINAKCIASRLATSTQTKKKEPLKMYCNQCQIKFTNRVTFKNHMTRHKNKTCPICDKQIRSAYLKKHMTLHEDAPVICEICGQTCKNPCSLRMHFFYYHKNPNFCVCEDCGRSFRTKTKLLYHQRKDHTKERNFKCETCGKAFFLKMYLTKHINMKHMKLRPHICEYCGKGFSGKHALRTHVRQHTNEAPYQCNFCGERFRQRVSLRGHLKSRHKIEEENKAFCDICGKGFASIVALDVHSRLHKEIKCPWCSDTFAEKEYLEQHINSAHSNAKEDAVADDGEFKWMNLEDFAKMIKLLTNIQVEITGDLPKVACISCTRKVKAAMVVRKQIIRSHRTLLEEALAKKNMTYMSNSSHTKALYDSGSHTPLEIKRSESKIEEDGFVAYGNLQTDVKNDFKMENEKCIIANEQISNQLNEKNVQSFSASINKNEISIVKIIKPNCEQTKVTRIPALLNNTSTQLRRAPKRQLLNFALNKSNIQLPKRPNPKIILPKRPCPKLTPSRPKIDPLSPVSCKVCQKTILHTNMKRHLETHDNRMVTCHLCGKITKNTTLRAHIFYFHKCKADEYVCDQCGRHFRYRHRFNLHMKKSHGGTRDFECTTCGRRFFERKFLTTHINSHHKKIRPFICDYCGKDFSSKHALNVHLRQHTESSPYSCDSCGLKFKQKVSLKTHRKQAHDICEEETVFCEVCGKGFASTVALASHFRLHERKKCMHCSEVFVRDDYLERHIKDKHGT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -