Pcer023065.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Polydrusus cervinus
Gene Symbol
X-element\ORF2
Assembly
GCA_935413225.1
Location
CAKXYS010000569.1:128324-147924[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 9e-07 9.2e-05 24.0 0.6 1 23 886 908 886 908 0.98
2 13 3.4e-05 0.0035 19.0 0.3 1 23 914 936 914 936 0.95
3 13 4.9e-05 0.005 18.5 0.4 1 23 942 964 942 964 0.98
4 13 1.9e-06 0.0002 22.9 2.1 1 23 970 992 970 992 0.99
5 13 2.7e-05 0.0028 19.3 4.3 1 23 998 1020 998 1020 0.98
6 13 0.0015 0.15 13.8 4.3 3 22 1028 1047 1026 1048 0.91
7 13 8.3e-07 8.5e-05 24.1 2.2 1 23 1071 1093 1071 1093 0.99
8 13 1.3e-05 0.0014 20.3 1.8 1 23 1099 1121 1099 1121 0.96
9 13 0.00022 0.022 16.5 0.1 1 23 1127 1149 1127 1149 0.97
10 13 3.1e-07 3.1e-05 25.4 1.5 1 23 1155 1177 1155 1177 0.99
11 13 2.1e-05 0.0021 19.7 1.5 1 23 1183 1205 1183 1205 0.99
12 13 0.015 1.5 10.7 5.5 1 23 1211 1233 1211 1233 0.98
13 13 0.0034 0.35 12.7 5.3 1 23 1239 1262 1239 1262 0.98

Sequence Information

Coding Sequence
atGGATCAGTTAAAACTCTGCAGGACTTGCCTGTCGGAAAGTCCAACAATTTCAGTGTTTAATGGCTTGTGCCCAGAAGAAAACTTCAAATATTCTACATTTGCTGAAGCCATAATGAACTTAACATCAGTAACGattttggaATGTGATGGTTTACCAGAAAACATTTGCACAAATTGTGAAAAGCAGATTGCTTCTGtactaaaatttctaaaaacatGTGAAGAGTCTAATGTCACTTTAACTAAGTTATCAAAAAGCTTTAGTGTGAAGAAGGAAGAAATTGAGAAAATAAAGGatgtaaaatttgaaaccaaGACAGAAGATACAGAGttatttatagttacaaaaCCTAAAGTTCTGAAGAGGGTAAGTAATGAGTTAGTAACAGTGGTTGCAGCAGATAATGGTGAAGGTATTTCAAGATGTAGATCTTACATGAGTCATGGGGGTACAATGATTCTACAAAGGAATTACGCTGATAATACGTTTGGCTTTGCTGATGTTGACAAGTTTAGTTTTCTTTGTAGTGAGGGAGAATTTGAAATCTCCATGGTATATTCTAGCTCTTTGAACTTATTTATTGCTTGTATATACCGATCTCCAACCACCAATTGTGacgtttttctttttaagttgGAGGTGCTTTTGTATGGGTTACCTCCGCATGCATCCCTTATTCTTACGGGCGATTTTAACATTAATTACGAGAACAAAAACCTTCAAACTGTCCAGTCAATTGATTGCTTATTTAATTCTTTTGGTTTGAATATGCATGTGGATTCCTATACCCGTATAACTGCAAATTCCTCCTCTATATTGGATTATGTGTGCTCTAATATTACTAATGGACCTATTAAGTGTTCAGTTTTGAATCCAGGTATATCTGATCACGAGGCTGTTTTTTGCGAATTTGTAACTGATAATCAGAAATCTTTAGCTATTAAAAAACAGGGTCGGTTGTTTACAAGGCAGAATTATTTAAGATTCTCACGTGCGTGCTCAGGGTTTGTATGGAGTACGGTTCTGCGTGAAGCGGACTCTCTGCAGGCATTTTACCATAAAATTTTAAGCATTTTTAATCAAACATTCCCTATAGTCAATATAAAGTCTAAAAACAAAAAGCCATGGATCACTAGGGGAttgagagttttctctaaaaacATGAGATGCTTGCACTCAATAAGAAAATTTGCTTTTAataatgatgattttttaaattactttaataagTATCGTAGCATCTATCGCAAAACCATAAAACAGGCTAAACATGTCTACTATAAGAATAGAATTACTACAGCAAGCAATGGACAGAAGGAGATTTGGAGTATAGTTAATGATCTGAGAGGCAAGGGTTTAAAAACCGTTAATGATTCTAAACTGAAACCTGAAACTATCAATTCTTATTACTGTACAATAGCTCAACACCTAGCCGTAAATATAACTAATAATCACCAATTGACTGATCCTCTACAGTATCTTGGCCATGTTTCAGTGCGTGAATCGTTTTATTTTAGTCCTATCAGTTTAGATGAACTTAAATCCACGATTCTAGAAATTAAGAATAAGAACACTTCTGGATGGGATGATATCTCtgttaagatatttttgaacATTCCCGATGCAGCACTGGCTATCCTGGCTGAGGCTATAAATTTATCCGTTCATAGGGGTAGTTTTCCATTGCTTGTGGTGTTACCATTATTTAAGGGGGGTGATAAGGAGCTTCCTTCGAGTTATAGACCAATATCCTTGCTTCCTACTCTAACCAAGATTGtagaaaaattgattaaaaagaGAATGATtagttttttggaaaagcacAAACTACTGACATTGTCCCAGTTTGGATTCcagctaaataaaaataccgaTGACGCAATATTTCATGTTTTGGAGGAGCTATACTTGAGGCTAAATGATGGAGAGGGAGCCGCGGTGGTGTTCTGTGACTTGACCAAAGCTTTTGATTGCGTCTGTCATGAAATACTGCTGCGGAAACTTCAAGTGTATGGCTTTCGGGGTCCAATCTATGAGTGGCTCAGGTCTTATCTCTCTGAGCGGAGTCAGAGTGTCTGCTTTCGGGGGACTGCTTCAGGCAAACTAAATGTTTCGGCAGGGGTTCCACAAGGATCTGTATTGGGACCactgttgtttttattatatgttAACAATCTTCCCAATGTTATTAAATATGGTCATGGTGCATCATTTGCCGATGACGCAACAATTCTTTGGCACCACAAAGATTCGATTACTCTTAATAGTTTAATGCAGGAAGATTTGTTAAGTATTAAGAATAAATCGTACAAGTTTGAAAAAAATCTGTTAAGACACAAATGctttaaaactgaaaaaaactCAACTGAAACTGAAACTTCAATTGAAGTACCAAGTGAAGAAGAGAAACCTAAGGAAAAACCTCGTCGAGGGCCTGGCAGGCCTGGTTTGCGGGAACGAAAATCAAGCAACAAAAACGGAATATCTGATTATGTGGATATTGATGACGAATTTACTGAAGACAAAGTGGCTTTAAAAAAGATAGAAAAAGCAGATCAGGTTTCTGATGATAATTATTCAGATCAGGGAGATTTTAATGATGGTTTTACTAAAGATGACTCCTCGGATGACGATTTTGCACCACTTAGTGAATATAAATGCGACATCTGTGAGAAAgtgttcaaatttaaaagttcTCTGGAAGCTCATCAGGCATCACACTCAAAAGATAGACCCTTCTTGTGCAACATGTGTGGAAAGGGATATGCTGACAAGTATGGTCTGAAAAGTCACTTGCTAACTCATTCAGAAGATAAACCTTACATGTGCAAATTTTGCGGGGCGCGCTTTCGAACACAAGGAGCAGTTCGGGTTCATGTTAGGACACACACAGGAGAGCGACCATATAAATGCAAACTCTGCTCTAAAACTTTTGGTCAAAAGGCTAATTTACAACAACATGAACGAACCCACACTGGGGAAAAACCATATCCATGTACACTTTGTCCCAAGAGgttcAATCACAGTGGTAAACTAAAAATTCATATGAGGCACCACAGCGGTGAAAGACCTTATGGTTGTACACACTGTGACAAGTGTTTTGCAACAAAAGAAACCATGAAAAAGCACATCTGGACGCATACAGGAGAACGACCGCCTAATTATAAGcctAAACCAAAAGTGGACACCAGTCACATTCTTCCCAGATATGAATGTGAAGTATGCCATAAAAAGTTCAAGTTCCCCGCCAACCTAAAAGCTCATTTACGTAGACATACTAACGAGAAACCTTACCTGTGCAGTACTTGTGGAAAATCGTTTTCAGAAAAGCATGGACTAACCGTTCATTTAAATACTCATACAGGAGAAAAACCTTTTGCCTGTACTTTATGTGGTATTAAATTCACTGCACCTAACGGGCTTAGAGTGCATTTAAGGCGCCACACTGGAGAAAAACCATACAAATGTGAAATTTGTAATAAGAGTTTCTTCCAACCAAGTAACCTCATAAGTCACAAGCGTTCACACACCGGAGAGAAGCCATATGAATGTACCTTATGCTCAAAAAGATTTTCTGCCAGCAACAAACTGAAAATCCATATGCGCATGCACAGCGGTGAAAAACCCTACCAATGTCCCCATTGCAACGAAAGTTTTGGACGTAAAGATGTCTTAAAGTGTCATTTCAGGAGACATACTGGCGAGAAGCCTTTCACTTGCAAAATATGCCTCCAATCGTATTCACATAGTGGAACTTTACATACTCATCTCAAAACTCAACATAGAATGAAAGGTCATGATATGTCAGCCTACGAAttttaa
Protein Sequence
MDQLKLCRTCLSESPTISVFNGLCPEENFKYSTFAEAIMNLTSVTILECDGLPENICTNCEKQIASVLKFLKTCEESNVTLTKLSKSFSVKKEEIEKIKDVKFETKTEDTELFIVTKPKVLKRVSNELVTVVAADNGEGISRCRSYMSHGGTMILQRNYADNTFGFADVDKFSFLCSEGEFEISMVYSSSLNLFIACIYRSPTTNCDVFLFKLEVLLYGLPPHASLILTGDFNINYENKNLQTVQSIDCLFNSFGLNMHVDSYTRITANSSSILDYVCSNITNGPIKCSVLNPGISDHEAVFCEFVTDNQKSLAIKKQGRLFTRQNYLRFSRACSGFVWSTVLREADSLQAFYHKILSIFNQTFPIVNIKSKNKKPWITRGLRVFSKNMRCLHSIRKFAFNNDDFLNYFNKYRSIYRKTIKQAKHVYYKNRITTASNGQKEIWSIVNDLRGKGLKTVNDSKLKPETINSYYCTIAQHLAVNITNNHQLTDPLQYLGHVSVRESFYFSPISLDELKSTILEIKNKNTSGWDDISVKIFLNIPDAALAILAEAINLSVHRGSFPLLVVLPLFKGGDKELPSSYRPISLLPTLTKIVEKLIKKRMISFLEKHKLLTLSQFGFQLNKNTDDAIFHVLEELYLRLNDGEGAAVVFCDLTKAFDCVCHEILLRKLQVYGFRGPIYEWLRSYLSERSQSVCFRGTASGKLNVSAGVPQGSVLGPLLFLLYVNNLPNVIKYGHGASFADDATILWHHKDSITLNSLMQEDLLSIKNKSYKFEKNLLRHKCFKTEKNSTETETSIEVPSEEEKPKEKPRRGPGRPGLRERKSSNKNGISDYVDIDDEFTEDKVALKKIEKADQVSDDNYSDQGDFNDGFTKDDSSDDDFAPLSEYKCDICEKVFKFKSSLEAHQASHSKDRPFLCNMCGKGYADKYGLKSHLLTHSEDKPYMCKFCGARFRTQGAVRVHVRTHTGERPYKCKLCSKTFGQKANLQQHERTHTGEKPYPCTLCPKRFNHSGKLKIHMRHHSGERPYGCTHCDKCFATKETMKKHIWTHTGERPPNYKPKPKVDTSHILPRYECEVCHKKFKFPANLKAHLRRHTNEKPYLCSTCGKSFSEKHGLTVHLNTHTGEKPFACTLCGIKFTAPNGLRVHLRRHTGEKPYKCEICNKSFFQPSNLISHKRSHTGEKPYECTLCSKRFSASNKLKIHMRMHSGEKPYQCPHCNESFGRKDVLKCHFRRHTGEKPFTCKICLQSYSHSGTLHTHLKTQHRMKGHDMSAYEF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-