Pcer032806.1
Basic Information
- Insect
- Polydrusus cervinus
- Gene Symbol
- -
- Assembly
- GCA_935413225.1
- Location
- CAKXYS010000985.1:31046-35105[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.6 1.7e+02 4.3 0.2 3 16 53 66 52 68 0.89 2 14 0.15 15 7.6 1.1 2 21 132 151 131 152 0.92 3 14 6.6e-05 0.0067 18.1 0.6 2 21 163 182 162 183 0.93 4 14 0.16 16 7.5 0.4 5 21 197 213 187 214 0.92 5 14 0.00018 0.018 16.7 3.5 1 23 223 245 223 245 0.98 6 14 2.1e-07 2.2e-05 25.9 1.8 1 23 251 273 251 273 0.98 7 14 2e-05 0.0021 19.7 0.8 1 23 279 301 279 301 0.98 8 14 0.016 1.7 10.6 2.5 1 23 307 329 307 329 0.93 9 14 9.1e-05 0.0093 17.7 0.1 2 23 349 370 348 370 0.95 10 14 1.8e-06 0.00019 23.0 0.5 1 23 379 401 379 401 0.95 11 14 4.7e-06 0.00048 21.7 0.9 1 23 407 429 407 429 0.98 12 14 2.3e-06 0.00023 22.7 1.3 1 23 435 457 435 457 0.99 13 14 2e-06 0.0002 22.9 1.1 1 23 463 485 463 485 0.98 14 14 1.1e-05 0.0011 20.6 0.6 1 23 491 513 491 513 0.98
Sequence Information
- Coding Sequence
- atggatTTGAAAATAACTGTAGACAATTTTCCACTGCTTTGCCGTTTCTGTTTAATACAAACTACTGAATTGAAACCTATATCTAAAATTCCTAGCACAGATATATTTAGGATAATTACCGGAATAcaaCTTAACAGTATGTTTCCTCAAAACATATGTTTAATATGTACACAAAGATTTAAGGacttttcaagttttattgaaaaatctaaaacaaatgctgatattttaaaagcaattttCGAAAAGTCTGCAGCTAAAAAAGATTGTGATAATTTTGATTATGAAGGGAATAATAGCAGTGATGAAGAAATGGATATTAAAATTGCAGTTAGAGAAGTCACAGCTGGACataagaatagaaaaatttcaagaaaatctACTAAAGGTCAGAAAtgtaaaaattgcaataaaccCTTTTTGAGTCTAAAATTACTATCAGAACACTACAAGAAGTCTTTGGGATGTAAGCCAAGTTCAAAATTACACTGTAAAGTATGTGGCACAAATTTTGTCAGAAAAAGCCAACTCAACATCCACTATAACGAATCTCAGGAATGCAAGCCGAAACCATCAATACAAACCTGTACTTGTGGGGCTGCATTCATAAATAAGAAACAACTGTATGCTCATCACAAAGACACTCCCGGCTGCCAGTCTAAAGATTATAACTGTTCACTGTGTAATAAAGCTTTTAATAAGCAACATAAGGTTGTGACCCACATGAGAAGTCACACTAAAGAAACGCCATTTGAATGCAAAGATTGTGGAAAAAAGTTTAGGTTTCAGCAGaatttaaaaagacatgtttTGATTCACGAGGGTATAAAACCATTTAAGTGCGAAGTTTGTGGAAAAGCATTTTCAAGGGCTCATGTTAGAAACGAACACATGAACATACACACAGGCCACAATCCATATATTTGTATGTATTGTGGTAAAGGATTCAAGAGATATGCTAATCACTTTATTCATGTTTATCGgcataaattaataaatggcGAAGTGAATAAATCAGATGATACAAAACTTTACTTACAGTTGGAATGTAAAGACTGCAATAAAATTTTCGCTAGCAGGGGAGGATTAGCAAATCACTTGGCTTTACATCAGAAAGAGCCTAGAGAAAAGAAGTTTTTGTGTTATGAATGTGGCAAAGGTTTTGTAACAAAAGCACAGTTGGAATCTCATACAAGAACCCACACAGGCGACAGACCGTATGAATGCAGTGCCTGTGGAAAAAAATTTCGTCAAAGAAGCGCCTATACTAATCATCAACTAGTACATTCAGGGGAAAAGCCATATCAATGCGAATTATGTGCTAAGTTGTTTACTCAATCAGGACACTTGAAAGTCCATATGAGAGTACACAGTGGTGAGAAGCCGTTTGTGTGTAAATTCTGTGAGAAATCTTTtgctttaaaaagtaatttaacggtacATACCAGGATCCACACGGGCGAAACACCCTTTATATGTTCAGTATGTGGACTTGGATATTATGACTCTACAAGTTTAAAAAAGCATATGAAAAGTCATGGCACTGTGGATGTACCTAATTATGGTCATATTAAACCTAagatagaaaaataa
- Protein Sequence
- MDLKITVDNFPLLCRFCLIQTTELKPISKIPSTDIFRIITGIQLNSMFPQNICLICTQRFKDFSSFIEKSKTNADILKAIFEKSAAKKDCDNFDYEGNNSSDEEMDIKIAVREVTAGHKNRKISRKSTKGQKCKNCNKPFLSLKLLSEHYKKSLGCKPSSKLHCKVCGTNFVRKSQLNIHYNESQECKPKPSIQTCTCGAAFINKKQLYAHHKDTPGCQSKDYNCSLCNKAFNKQHKVVTHMRSHTKETPFECKDCGKKFRFQQNLKRHVLIHEGIKPFKCEVCGKAFSRAHVRNEHMNIHTGHNPYICMYCGKGFKRYANHFIHVYRHKLINGEVNKSDDTKLYLQLECKDCNKIFASRGGLANHLALHQKEPREKKFLCYECGKGFVTKAQLESHTRTHTGDRPYECSACGKKFRQRSAYTNHQLVHSGEKPYQCELCAKLFTQSGHLKVHMRVHSGEKPFVCKFCEKSFALKSNLTVHTRIHTGETPFICSVCGLGYYDSTSLKKHMKSHGTVDVPNYGHIKPKIEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01241105;
- 90% Identity
- -
- 80% Identity
- -