Pcer034566.1
Basic Information
- Insect
- Polydrusus cervinus
- Gene Symbol
- -
- Assembly
- GCA_935413225.1
- Location
- CAKXYS010001080.1:12606-17548[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0016 0.17 13.7 5.3 1 23 46 68 46 68 0.94 2 19 3.4 3.5e+02 3.3 3.5 3 23 75 96 73 96 0.86 3 19 0.028 2.9 9.8 0.3 2 23 103 125 102 125 0.94 4 19 0.00028 0.029 16.1 1.7 1 23 131 154 131 154 0.94 5 19 0.00038 0.039 15.7 0.2 1 23 159 181 159 181 0.95 6 19 0.00013 0.014 17.1 1.3 1 23 190 212 190 212 0.96 7 19 3.6e-08 3.7e-06 28.4 1.8 1 23 219 241 219 241 0.98 8 19 5.1e-07 5.2e-05 24.7 1.9 1 23 247 269 247 269 0.99 9 19 9.6e-06 0.00098 20.7 0.7 1 21 275 295 275 296 0.96 10 19 3.8e-05 0.0039 18.8 7.2 1 23 325 347 325 347 0.97 11 19 0.26 27 6.8 2.0 1 23 352 375 352 375 0.88 12 19 0.098 10 8.1 0.2 2 23 382 404 381 404 0.93 13 19 0.0063 0.64 11.9 5.6 3 23 412 433 410 433 0.89 14 19 9.2e-05 0.0095 17.6 0.1 1 23 438 460 438 460 0.97 15 19 9.6e-07 9.8e-05 23.9 2.1 1 23 469 491 469 491 0.97 16 19 9e-07 9.2e-05 24.0 0.7 1 23 499 521 499 521 0.98 17 19 1.4e-05 0.0014 20.2 1.6 1 23 527 549 527 549 0.99 18 19 1.9e-05 0.002 19.8 1.2 1 23 555 577 555 577 0.98 19 19 2.1 2.2e+02 3.9 1.5 1 14 583 596 583 604 0.82
Sequence Information
- Coding Sequence
- ATGAAAATACACACCTGGACAGGACCTGATCAATGTGATAAGTGCAAGCAAAGatCAATAATTACAGTGAAAATAGAGGCGAACTATCCCGATATAAAATCTGAACAGCTCAAGTCAGAATCTACCAAACGTTCATACAAATGCGATAAATGTAATAAGTCGTACTCTACGAAAAAACGACTTAGCCAGCACAAGACTTTCCACAATGAAAAAACACATCTGTGCGATCTCTGTCCCAAAAAGTATCTATTTGCTCATATGTTAAAAAAGCACAAAGAACTATCACATGGAGACAAAAATAGAGTTTCCTGCGAACTCTGCGGTAATAAGTTTTGGAGTAAATATGCTTTAAGAGACCATATCAAGTTTCTCCatgaaaaaagttataacttcATTTGTAATAGGTGTGGTAAAGGATTCAGGGATAAACTTCACTTAAGTCAACACGAGGAGTCGTCTCACAAAGGTTTCAGATTTGACTGTGAGATATGCGGGAAACCTTTCGTATCAcaaaaatcaaaagaaaatcaTGTCGTCAAGCATGATCCAAACTACAAAATTCCCGAGTACGATTGTAATCAATGCGGGAAAGTTTTTACAGCTTTACAGACTTTAAACAAGCATTTTTCGAAGCATGCGAATGGCGGTCCAAAGTTTGTGTGTGAACACTGCGGGAAATCAGTAACAACCTCGAGTTCTCTTAGGGATCACATGAGGACTCATAGTGGTGAGCGACCATTCAAATGTGAAGTATGCCAGAAACGATTTAACAGATCTAGTATGCTTCAGATTCACAGAAGGGTGCATACAAAGGAGAAACCGTACGTTTGCAAGTACTGCCTTAAGacttttactcaaagaggatctttaaaaattcatttgaGATTACGTGGTGTTAAACTAGAGGTATACCCATATGTAAACGTCGATGTTAAGCCTGAATTTGTTAATATAGATCCAGTGGATGGTCTTTATCAATGCGATAAGTGCAACAAATCCTATCGAAGAAAAGACCAACTACATCGACATAAGAAATTTCACAGAGAAAAAACTTTCAGCTGTGATCTATGTcccaagaaatatttatttgctcatatgCTCAAGAAGCACAAAGAGGCATCCCATGGCGACAAAGACAGGGTCACTTGCGATATTTGTGGTAAAAATATGTGGAGTAAATACGCGTTAAAAGATCACATTAAGTTCGTAcatgaaaaaaaattccaaatattttgtgaaaagtGCGGAAAATGCTTCAGAAGTACATTTCATTTAAACGAACACGATAAAACAACCCACCAAGGTATTAGTTATAATTGCGAGATATGCGGTAAGCCTTTTGCAGATCAAAACGGAAAAGAAAGACATATTGTTAAGCACGATCCAAATTACGAAGGACCCAAATACCCTTGCAACCAATGCGATAAAGTATTTTCTAcacaaacttatttaaataagcaTTTGTTCAAGCATGATGTAAACGGCCAGCCTCAGTTCGTCTGTGAACATTGCGGTAAAGCTTTGGTAACTAAGAGTTCTCTAAGAGATCATCTGAGAATTCACACCGGTGAACGGCCTTTTAAATGTGatatttgtcaaaaaacttttaataaaactgcAATGCTTAGGATTCATAAAAGAGTACATACGAAGGAAAGGCCTTACGTTTGTAAATATTGTCTTAAGACTTTTACTCAAGGGGGATCTCTGAGAATACATTTGAGATATCACACCGGAGAAAGGCCTTATTCTTGTGTCATATGCAATGAGAAGTTTTTTAGCAAAACTATTTTGGATAATCACAGttgtaataaaagcaaaattcaGTGA
- Protein Sequence
- MKIHTWTGPDQCDKCKQRSIITVKIEANYPDIKSEQLKSESTKRSYKCDKCNKSYSTKKRLSQHKTFHNEKTHLCDLCPKKYLFAHMLKKHKELSHGDKNRVSCELCGNKFWSKYALRDHIKFLHEKSYNFICNRCGKGFRDKLHLSQHEESSHKGFRFDCEICGKPFVSQKSKENHVVKHDPNYKIPEYDCNQCGKVFTALQTLNKHFSKHANGGPKFVCEHCGKSVTTSSSLRDHMRTHSGERPFKCEVCQKRFNRSSMLQIHRRVHTKEKPYVCKYCLKTFTQRGSLKIHLRLRGVKLEVYPYVNVDVKPEFVNIDPVDGLYQCDKCNKSYRRKDQLHRHKKFHREKTFSCDLCPKKYLFAHMLKKHKEASHGDKDRVTCDICGKNMWSKYALKDHIKFVHEKKFQIFCEKCGKCFRSTFHLNEHDKTTHQGISYNCEICGKPFADQNGKERHIVKHDPNYEGPKYPCNQCDKVFSTQTYLNKHLFKHDVNGQPQFVCEHCGKALVTKSSLRDHLRIHTGERPFKCDICQKTFNKTAMLRIHKRVHTKERPYVCKYCLKTFTQGGSLRIHLRYHTGERPYSCVICNEKFFSKTILDNHSCNKSKIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -