Pcer034573.1
Basic Information
- Insect
- Polydrusus cervinus
- Gene Symbol
- -
- Assembly
- GCA_935413225.1
- Location
- CAKXYS010001080.1:69703-72862[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 3.5 3.6e+02 3.2 0.0 1 21 23 43 23 44 0.93 2 17 3.9e-07 4.1e-05 25.1 2.4 1 23 72 95 72 95 0.97 3 17 6.9e-06 0.00071 21.2 0.2 2 23 102 124 102 124 0.96 4 17 4.3e-06 0.00044 21.8 0.2 2 23 130 152 129 152 0.95 5 17 0.0042 0.43 12.4 0.4 2 23 159 181 158 181 0.96 6 17 0.002 0.2 13.4 3.2 1 23 188 213 188 213 0.87 7 17 0.0069 0.7 11.7 1.9 1 20 220 239 220 242 0.90 8 17 5.3e-07 5.5e-05 24.7 0.4 1 23 246 268 246 268 0.99 9 17 4.1e-07 4.3e-05 25.0 1.6 1 23 341 364 341 364 0.97 10 17 0.0013 0.13 14.1 2.1 2 23 371 393 371 393 0.92 11 17 2.1e-05 0.0022 19.6 5.2 1 23 398 421 398 421 0.98 12 17 0.016 1.7 10.6 0.9 3 23 429 450 427 450 0.95 13 17 0.007 0.72 11.7 0.7 1 23 457 482 457 482 0.87 14 17 0.00013 0.013 17.1 1.5 1 23 489 511 489 511 0.94 15 17 5.3e-06 0.00055 21.5 0.8 1 23 514 536 514 536 0.99 16 17 2.9e-06 0.0003 22.3 0.7 1 23 542 564 542 564 0.97 17 17 0.007 0.72 11.7 1.3 1 22 570 591 570 591 0.95
Sequence Information
- Coding Sequence
- ATGTTTCATGCTGTGTTTAAACCTCTCCTTGTCCTAaaCCTGGACCGTAATACATCGTCTGTGACGTATCAGTGTGTCCAGTGTGCTTTGGTTGTTACTACTTATGAAAAATTGGGCAGTCATGTGAAAGAGTGTGTCATTTCCTCTAATGAATCATTCCAACGCCCTCCCGTAAATTCTGTTGTCAAAAAAGAgaacgaaaaagaaaaaaaatttacctgcacAGAATGTAACAAAACGTTTTCTACGAAAAAGTACCTAACCTCGCATATTAACAGTGTCCATAAAAGGACGAGATCGGCTTCTTGTACAGAGTGTGGAAAAACTTTTGCCCGAGGATGGAATTTAAAACAACACTTGATCACAGTTCACGAAGGTTTTATTGTTAGATGTGAAATTTGTGGTACAAACTTTAAGGATAAAGGTGGTCTACGCAAGCACATAAAActaattcattttaaagaatttaatatGACTTGTGATTTATGCAATAAAGGTTTTCTTTACGCGAGTCAGCTGGAACAACACAAAAAAATGGTTCATGAAGGTCAAGTGATCATGCATGCCTGCAAGCAGGAAGGATGTAAAAAAACGTTCAGATCCAGGAGTGGGTTAAAACATCATTTTGAAGCCGAGCATATTACTGAAAAACCTGAATTTTTGTGCGGACAATGTGGAAAAACATACGATCATTTTCCAAACTTTCAAAAGCACATTTGGCGACACAATAGTCCATACAAGTGCAGTGTTTGTGACAAAACTTTAACGAGTAAGGGAAATCTGGAAAGTCACATGTTAATTCACACAGGAGAAAAACCATTTATATGTGAGCACCCGAACCAAGATCTATCGTCAGTAAATTATCAGAGTGTCCCATGTGCTGTAGTCCTTCCCACGTACGAAATATTAGTTACTCCTGAAAATAAGTGCATCATTCAATATAATGAATCAGTTTTTACCCTACAAACGAAACAAAACGAAAATTCTGTTGTCAAAACAGAAATCAAGACGGAACCACGTTTTTCCTGCACCGAATGTAACAAATCGTTTTCCACTAAAAAATACCTAAACATACATATTAACAGTATCCATAAAGGGATGAAATTAGCTTCTTGTACACAgtgtaaaaaaacgtttacaACAAGATGGAGGTTAAGGCAACACGTCGTCTCCAATCACCaagcaattaattttaagtgcGAGCTTTGTACTACAAAGTTTAAGCATAAGAGTAGCTTACAAAAGCACAAAAGGgtaattcattttaaagaatttaatatGCATTGTGACATTTGCAATAAGGGATATCTTTACGCCAGTCAGTTAGAGCAGCATAAGAAAATGGTCCATGAAGGTACAGTGATCATTCATGCTTGCAAACAAGAAGGGTGTAAAAAGACATTTAGGTCTATTAGTGGTTTAAAATACCACGTTGACGCCGAGCATGTAACGGAGAAACAGGAATTTTTATGTGGACAATGTGGAAAAACATACGATCATCCTTCAAGCTTTCGAAGTCACCTTCTGCTTCATAATCCATACAAGTGTACTATTTGCGAAAAAACAATAACGACTAAAAAAAGTTTAGAGAGTCATATGCTAATTCATACAGGAGAAAAACCATTTGTTTGTGAGCTTTGTGGACGGCGTTTTAACAAGCTCTACAATCTTAAAACACACATGGTTGTGCACacgaaagaaaaacattttgcGTGCCAATTTTGTGACAAAAAATATACTCAACGAGGTCCTCGAAAACAACATATGCGTCGATGTTCAGGAAGGAAGGCTACCGATCGCATACCTTGTGCTGATAATACAGCACATCAAGGATTAAAAACGGAAAATACCtaa
- Protein Sequence
- MFHAVFKPLLVLNLDRNTSSVTYQCVQCALVVTTYEKLGSHVKECVISSNESFQRPPVNSVVKKENEKEKKFTCTECNKTFSTKKYLTSHINSVHKRTRSASCTECGKTFARGWNLKQHLITVHEGFIVRCEICGTNFKDKGGLRKHIKLIHFKEFNMTCDLCNKGFLYASQLEQHKKMVHEGQVIMHACKQEGCKKTFRSRSGLKHHFEAEHITEKPEFLCGQCGKTYDHFPNFQKHIWRHNSPYKCSVCDKTLTSKGNLESHMLIHTGEKPFICEHPNQDLSSVNYQSVPCAVVLPTYEILVTPENKCIIQYNESVFTLQTKQNENSVVKTEIKTEPRFSCTECNKSFSTKKYLNIHINSIHKGMKLASCTQCKKTFTTRWRLRQHVVSNHQAINFKCELCTTKFKHKSSLQKHKRVIHFKEFNMHCDICNKGYLYASQLEQHKKMVHEGTVIIHACKQEGCKKTFRSISGLKYHVDAEHVTEKQEFLCGQCGKTYDHPSSFRSHLLLHNPYKCTICEKTITTKKSLESHMLIHTGEKPFVCELCGRRFNKLYNLKTHMVVHTKEKHFACQFCDKKYTQRGPRKQHMRRCSGRKATDRIPCADNTAHQGLKTENT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -