Pcer031713.1
Basic Information
- Insect
- Polydrusus cervinus
- Gene Symbol
- -
- Assembly
- GCA_935413225.1
- Location
- CAKXYS010000925.1:142633-146983[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00058 0.059 15.1 5.1 1 23 11 33 11 33 0.98 2 17 0.00018 0.018 16.7 0.1 2 23 40 62 40 62 0.97 3 17 0.00012 0.012 17.3 0.8 2 23 70 91 69 91 0.96 4 17 0.00023 0.024 16.4 2.9 1 23 100 123 100 123 0.94 5 17 0.00038 0.039 15.7 0.2 1 23 130 152 130 152 0.97 6 17 1.7e-05 0.0018 19.9 2.7 2 23 159 180 158 180 0.98 7 17 1.4e-07 1.5e-05 26.5 0.9 1 23 186 208 186 208 0.98 8 17 0.00047 0.049 15.4 5.1 3 23 537 557 536 557 0.98 9 17 3.7e-06 0.00038 22.0 0.5 2 23 564 586 563 586 0.96 10 17 0.0061 0.63 11.9 6.2 1 23 593 615 593 615 0.97 11 17 0.0027 0.28 13.0 1.3 3 23 623 644 621 644 0.95 12 17 0.00014 0.014 17.1 4.8 2 23 652 673 651 673 0.96 13 17 0.00017 0.017 16.8 5.7 1 23 682 705 682 705 0.95 14 17 0.012 1.3 10.9 0.7 1 23 712 734 712 734 0.97 15 17 5.7e-06 0.00058 21.4 1.2 2 23 741 762 740 762 0.97 16 17 3.1e-07 3.2e-05 25.4 3.6 1 23 768 790 768 790 0.98 17 17 0.00015 0.016 16.9 1.0 1 23 796 819 796 819 0.98
Sequence Information
- Coding Sequence
- ATGGTATCTGTACACGAACAAAGCAAAAAATTTCATTGCAATCAGTGCCCAAAAATATTCAAAACCAAACATGGCTTTTTGGATCACATCAACAGACATTTAAAACAGTTTGTTGCTACATGCGACGATTGTGGTAAAGGGTTTGTGACAATTCAAGAATACGAGGCTCATATAAACAAAAGACACAATGACAATCGACAGACGTTAATCTGCTTTGTTTGCGGAAGAACTTGTGTAGATAAGGCCTCTTTAACTGGTCATTTAAGAACTCATGAGGATGGTTATTATGACGAAAAATTCTCCTGCGACTATTGCGGCAAGAGATTTGCCCAAAAACGTGGCCTCGATCACCATTATGTAAGAAAACACAAAGATGGAGGCGAGCGCTTTATTTGTGACCTTTGCGGAAAAGAAGTAAATTCTAAGCGCAGCCTTAAAGGCCACATGTTGCTTCATCAAGGTATGAAACCCGTTCAGTGTCCTCATTGTGAAAAAAGTTTTGCCTTACACAGTACTTTAAAACAACATATCTTAACGCATACTGGCGAGAGACCGCATAAATGTGAGGAGTGTGGAAAGAGCTTTACGCAGAGGGGACCTTTAAAAGCTCATATGCGTGCCCACTCGGGAGAATTCGGAAATATACCCTTACAAGAAATTAAAAGATACGTTGACGTTTTTGCATCTAAAGCGACAAAGCGCGCCTATAAATCAACATGGAAAAATTTTTGTTCTTTCTGCAGGGAAAGGGGATACAAACAACTACGTTCTACAACAATCGACCAGTTAGCTCGGTATTTGGCAGATTTTGGTTTTAACATGAGGAAGCAAAACGGAGAACATTATAAAGAATATAGTGTAAAGACTGTGTGGAACACTGCTGCGAAAATATTACAACGTAAATACGCTGAAGAATATGGTGTTATTTTTAATCCCTTTGACGATATACGGTTTAAAAAAGCTCGAGAAGCAAGGGACACATTAAGGAAAATACTGAGAATTAACCAGCAAAAACGAAAAGCCAGTTCGGAAATCCTAACTTTAAACGATTTAAAGAGAATAACAGATACTTGTAATGAGGATACGCCAGATGGCCTTCAAAAGAAATTTATACATATTGCGTCATACGAACTGGCTTGGCGTGTGAGAGAAACTAGTCAATGTATGATTTATTTCTTTCGGGAggaaattgataataaagaaaatctaaCAAATCGCATCATTTACAACCCGAAGTTCACAAAAATTATTCAAGATGATGTTAGAAACTATGCGGGAAACAAATTTCTTCATGTAAACTTGGCAGATCCTAGCTTGTGTCCAGTAcgattatttagaaaattactACGCAAAAGAACACCAAATATTCTTActgataaaatgtttttaactccGAATCAGTTTTGGAACCAGCATTCTAACTCTGCATGGTACAGAAATACGCCCTTTGGTAAAAATGAATTGAGCAAATGGAAAAGACAACCTTTGGAGAAAATCGGTTTGAATACAGAATTGAAATGGACAGGCAAAAACTTTAATAGGACTGTTATCGTAAAACAGGAATTTATCGAAATTAGTCCCCTAAAAAAAACATCGAAAATGCCAAATTGTCCTCAATGCAAAAAAAGGTGCAAAAATAAGACATTCTTGGAAAAACACATGATTACCCATTTTGAAGCAAGACCTTGGAAATGCCCCATTTGTCCAAAATCTTTTAAACAACGCTATGAAATGTACAGACATGTTAAATCTATACACGAGGATGGCGGTAAAACCTTTCACTGCAATCAATGTACCAAAGTTTTCAAAACAAAACACGGCTTTTTGGATCACGTCAGCAGACACGAGAAACAGTTCGTTGTTCATTGTGACCTTTGCGATCGAGGCTTCGTAACAAAATATGAATACGAAGCTcacaataaaaagaaacacGACAATACCCAGGAAATATTAATCTGCTTCGTGTGCGGACGAACATGCTGTGATAAGTACTCTTTAACATCCCATTTAAGAACCCACGAAGATGGTTATCACgacgaaaaatattcctgtGATCACTGCGGTAAAAAATTTGCTCAGAAACGAGGTCTTAAACATCATTTTATCCGAAAACATAAAGATGGTGGTCAGAAATTCGTGTGTAACCGTTGTGGTAAAGAAGTGCATTCAAAAATAAGCCTAAGAGGTCATTTGTTGCTTCACGAAGGAGCGAAACCTCTGCAGTGTCCTCATTGCCAGAAATCATTTGCCTTAGCCAGTACTCTTAGGACTCATCTTCTAACTCATACAGGTGAGAGGCCGCATAAGTGTGAAGAGTGCGGTAAATGTTTTACGCAGAGGGGACCTTTAAAGGCCCATATGAGGAGCCATACCGGGGAAACTCCTTATCAGTGTGACATTTGCACCCGTGCCTTTGTTACTAAAGCACTACTTACGTTTCATATGAAAAAAACGCATGCGACTGTTTAA
- Protein Sequence
- MVSVHEQSKKFHCNQCPKIFKTKHGFLDHINRHLKQFVATCDDCGKGFVTIQEYEAHINKRHNDNRQTLICFVCGRTCVDKASLTGHLRTHEDGYYDEKFSCDYCGKRFAQKRGLDHHYVRKHKDGGERFICDLCGKEVNSKRSLKGHMLLHQGMKPVQCPHCEKSFALHSTLKQHILTHTGERPHKCEECGKSFTQRGPLKAHMRAHSGEFGNIPLQEIKRYVDVFASKATKRAYKSTWKNFCSFCRERGYKQLRSTTIDQLARYLADFGFNMRKQNGEHYKEYSVKTVWNTAAKILQRKYAEEYGVIFNPFDDIRFKKAREARDTLRKILRINQQKRKASSEILTLNDLKRITDTCNEDTPDGLQKKFIHIASYELAWRVRETSQCMIYFFREEIDNKENLTNRIIYNPKFTKIIQDDVRNYAGNKFLHVNLADPSLCPVRLFRKLLRKRTPNILTDKMFLTPNQFWNQHSNSAWYRNTPFGKNELSKWKRQPLEKIGLNTELKWTGKNFNRTVIVKQEFIEISPLKKTSKMPNCPQCKKRCKNKTFLEKHMITHFEARPWKCPICPKSFKQRYEMYRHVKSIHEDGGKTFHCNQCTKVFKTKHGFLDHVSRHEKQFVVHCDLCDRGFVTKYEYEAHNKKKHDNTQEILICFVCGRTCCDKYSLTSHLRTHEDGYHDEKYSCDHCGKKFAQKRGLKHHFIRKHKDGGQKFVCNRCGKEVHSKISLRGHLLLHEGAKPLQCPHCQKSFALASTLRTHLLTHTGERPHKCEECGKCFTQRGPLKAHMRSHTGETPYQCDICTRAFVTKALLTFHMKKTHATV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -