Basic Information

Insect: Polydrusus cervinus
Gene Symbol: -
Assembly: GCA_935413225.1
Location: CAKXYS010001080.1:64592-67470[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.00023 0.023 16.4 0.5 1 23 36 59 36 59 0.93

2 18 1.9e-05 0.0019 19.8 0.5 2 23 66 88 66 88 0.96

3 18 0.00074 0.076 14.8 2.4 2 23 94 116 93 116 0.96

4 18 0.0021 0.21 13.4 2.1 2 23 123 145 122 145 0.93

5 18 0.0076 0.78 11.6 2.8 1 23 152 177 152 177 0.90

6 18 4.1e-05 0.0042 18.8 3.6 1 23 184 206 184 206 0.98

7 18 0.00013 0.014 17.1 0.6 1 23 210 232 210 232 0.99

8 18 4.4e-05 0.0045 18.7 0.4 1 23 238 260 238 260 0.97

9 18 0.00069 0.071 14.9 1.2 3 21 268 286 266 287 0.94

10 18 2.9e-06 0.00029 22.4 0.6 1 23 337 360 337 360 0.95

11 18 0.00042 0.043 15.6 0.8 2 23 367 389 366 389 0.90

12 18 0.0004 0.041 15.6 0.1 2 23 397 419 396 419 0.90

13 18 0.0065 0.66 11.8 1.2 2 23 426 448 425 448 0.96

14 18 0.00088 0.09 14.5 0.5 3 23 457 480 455 480 0.89

15 18 3.6e-05 0.0037 18.9 2.4 1 23 487 509 487 509 0.95

16 18 4.7e-06 0.00049 21.7 0.6 1 23 516 538 516 538 0.99

17 18 3.4e-06 0.00035 22.1 1.2 1 23 544 566 544 566 0.97

18 18 0.00075 0.077 14.8 6.0 1 23 572 595 572 595 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.00023	0.023	16.4	0.5	1	23	36	59	36	59	0.93
2	18	1.9e-05	0.0019	19.8	0.5	2	23	66	88	66	88	0.96
3	18	0.00074	0.076	14.8	2.4	2	23	94	116	93	116	0.96
4	18	0.0021	0.21	13.4	2.1	2	23	123	145	122	145	0.93
5	18	0.0076	0.78	11.6	2.8	1	23	152	177	152	177	0.90
6	18	4.1e-05	0.0042	18.8	3.6	1	23	184	206	184	206	0.98
7	18	0.00013	0.014	17.1	0.6	1	23	210	232	210	232	0.99
8	18	4.4e-05	0.0045	18.7	0.4	1	23	238	260	238	260	0.97
9	18	0.00069	0.071	14.9	1.2	3	21	268	286	266	287	0.94
10	18	2.9e-06	0.00029	22.4	0.6	1	23	337	360	337	360	0.95
11	18	0.00042	0.043	15.6	0.8	2	23	367	389	366	389	0.90
12	18	0.0004	0.041	15.6	0.1	2	23	397	419	396	419	0.90
13	18	0.0065	0.66	11.8	1.2	2	23	426	448	425	448	0.96
14	18	0.00088	0.09	14.5	0.5	3	23	457	480	455	480	0.89
15	18	3.6e-05	0.0037	18.9	2.4	1	23	487	509	487	509	0.95
16	18	4.7e-06	0.00049	21.7	0.6	1	23	516	538	516	538	0.99
17	18	3.4e-06	0.00035	22.1	1.2	1	23	544	566	544	566	0.97
18	18	0.00075	0.077	14.8	6.0	1	23	572	595	572	595	0.97

Sequence Information

Coding Sequence: ATGGTTAGTCATGAGAATCAGTGTGTCATTCAATATAATGAATTACCTAAATTTCCCAAAATTGAAGATTCAATTACGAATGTAGAAACcgaaaaaaatacaagttttcTATGCGCAGAATGTGACAAATCGTTTTTGAGAAAATGGTACCTAACAAGACATATTAACAATGTCCATAAGCGGCTGAAAGTGGCTTCGTGTACGGAGTGCGGACAAATGTTTACAGCTCAGCGAAGCCTTCAGAGACACATCAATTCAATTCACCAAGGAATGATTATCAAATGCGAGATATGTGGTGCAACCTTTAAATGTAACGATAGTTTGCGAAGACATAAAAAACGAATTCATTTTAAGGTATTTGATATAAAATGTGATATGTGCAGTAAGAGATTTTTTAATGCCACTGAATTACATAAACATAAATTGTTGGTCCACGAAAATCAAATAATCGTCCATATATGCACTGAAAATGGATGTAAAAGAACATTCAGATCTAGGGCTGGTTTAAAGCATCATTTTAATGCCGAACATGTTACAGATAAACCCGAATATTATTGTGTGGAATGTGAAAAAACCTTCGATCATCTCTATAATTTTCAAAGGCATCTTTTGCGGCACAAAAGTCCATATAAGTGTGGCATTTGTAAGATATCTGTTACAACTAAGGAAAGTTTCGATACTCACATGCTAACTCACCCAGGAGAAGAACCATTTGTTTGTAAGCTCTGCGACCGCAGTTTTAACAAACTCGGTCGTCTTAAAGCGCACATGGTTGTTCACAACAAAGAAAAATCTTTAGCATGTAAATTTTGTAACAAGAAGTATACTCGACAAGGTTTTCTAGCACATCATATTCGACAGTGTTTACTAGGTTTAAAAGAGAAGTGTGCTCTAGTAGTTGACATATATGAAAAATTAATCGTTCATGAGAGATACTGCTGTGAAAATAATGATAAATCAGTAGCATATCCTAAAAATGAAAGAGAGGCAGACAAGAAACATGCTGGGTTTCCCTGTCCAGAATGTGGTAAATCATATGCCAAAAAGAGCTATTTGAATTCGCATAAAAATTACGTTCACAAAAGAACGCTGATGACTTCTTGCACGGAATGTGGAAAATCATTTACTAATAAATGGATTCTAAATAAACACTTTGATTCAGTTCACCGGGGTATcattaaatattccgaatgcgaTATCTGCGGAGAAAAGTTTACACAGAGGAATGGTTTACTACAACACAGAGATGctatccatttaaaaaaatttaacaagtaTTGTGAAATCTGCAATAAAGGATTTCTTTATGTAAGTCAGTTAAATAAACATAAGAAAAAGGTTCATGATCGTGATATCGAGATAATAGCTTGCACCCAAGAAGGATGCAAGAAAACTTTTCGATCAACCAGCAGTTTAAAATACCACTTAAGCGCCGACCATACCACAGAAAAACCCAATTTTTTATGTGGCCAGTGTGGGAAGACATTTGATCATCCTGGTTTATTTAAGAAGCACCTTCGGTTTCACAAGAGAGAGCAGGTTCTGTACAAGTGTAACCTTTGTGAGAAAGTAGTCACGTCTAAAGGTAGCTTTGAATCCCACATGCGCATTCACACAGGGGAGAAACCGTTCGTATGTGAGCAGTGCGGGTTGTGTTTCAAGCAACGAGGCAGTTTAAGAAGTCATATGGTCGTTCATACTAAGGAAAAACCGTTCTCTTGTAAATTTTGTGATAAGAAATATACTCAGCAAGGTCCTTTGACTCAACACATTCGACATTGTCACCCTGAGGTGGTGAAGAAAGTTGGAAATCAAATATTAGTTCATGAATTGAATGAGAAGGAAAAATTAACTACACAATAG
Protein Sequence: MVSHENQCVIQYNELPKFPKIEDSITNVETEKNTSFLCAECDKSFLRKWYLTRHINNVHKRLKVASCTECGQMFTAQRSLQRHINSIHQGMIIKCEICGATFKCNDSLRRHKKRIHFKVFDIKCDMCSKRFFNATELHKHKLLVHENQIIVHICTENGCKRTFRSRAGLKHHFNAEHVTDKPEYYCVECEKTFDHLYNFQRHLLRHKSPYKCGICKISVTTKESFDTHMLTHPGEEPFVCKLCDRSFNKLGRLKAHMVVHNKEKSLACKFCNKKYTRQGFLAHHIRQCLLGLKEKCALVVDIYEKLIVHERYCCENNDKSVAYPKNEREADKKHAGFPCPECGKSYAKKSYLNSHKNYVHKRTLMTSCTECGKSFTNKWILNKHFDSVHRGIIKYSECDICGEKFTQRNGLLQHRDAIHLKKFNKYCEICNKGFLYVSQLNKHKKKVHDRDIEIIACTQEGCKKTFRSTSSLKYHLSADHTTEKPNFLCGQCGKTFDHPGLFKKHLRFHKREQVLYKCNLCEKVVTSKGSFESHMRIHTGEKPFVCEQCGLCFKQRGSLRSHMVVHTKEKPFSCKFCDKKYTQQGPLTQHIRHCHPEVVKKVGNQILVHELNEKEKLTTQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -