Pcer031711.2
Basic Information
- Insect
- Polydrusus cervinus
- Gene Symbol
- -
- Assembly
- GCA_935413225.1
- Location
- CAKXYS010000925.1:131112-138932[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 2.1e-05 0.0022 19.6 2.1 1 23 35 57 35 57 0.95 2 23 0.0063 0.64 11.9 0.1 1 23 135 157 135 157 0.95 3 23 0.00052 0.053 15.3 0.3 2 23 169 191 169 191 0.96 4 23 0.0035 0.36 12.7 1.8 1 23 226 248 226 248 0.98 5 23 0.0031 0.32 12.8 1.2 2 23 255 277 255 277 0.93 6 23 8.6e-06 0.00088 20.9 3.7 2 23 289 310 288 310 0.97 7 23 3.3e-05 0.0033 19.1 0.7 1 23 316 338 316 338 0.96 8 23 0.00054 0.056 15.2 0.4 1 23 344 366 344 366 0.98 9 23 0.0032 0.33 12.8 1.1 2 23 373 395 372 395 0.95 10 23 5.4e-05 0.0056 18.4 2.3 2 23 400 422 399 422 0.94 11 23 0.051 5.3 9.0 1.1 2 23 432 451 431 451 0.89 12 23 2.9e-05 0.003 19.2 0.5 3 23 462 482 461 482 0.98 13 23 1.7e-07 1.7e-05 26.2 1.5 1 23 488 510 488 510 0.99 14 23 9.4e-06 0.00097 20.8 3.8 1 23 516 538 516 538 0.98 15 23 0.00025 0.025 16.3 3.2 1 23 581 603 581 603 0.98 16 23 7e-06 0.00072 21.2 3.0 1 23 611 633 611 633 0.98 17 23 1e-06 0.0001 23.8 1.5 1 23 640 662 640 662 0.98 18 23 0.018 1.8 10.5 1.4 2 23 669 691 668 691 0.96 19 23 0.0042 0.43 12.4 0.6 2 23 699 720 698 720 0.93 20 23 0.0018 0.18 13.6 1.0 1 23 726 749 726 749 0.95 21 23 0.0012 0.12 14.2 0.8 2 23 755 776 754 776 0.97 22 23 2.2e-06 0.00023 22.7 3.2 1 23 782 804 782 804 0.98 23 23 3e-06 0.00031 22.3 0.1 1 23 810 833 810 833 0.98
Sequence Information
- Coding Sequence
- ATGTGCCCTTTAGGCTGTAAttctgAAGAAATATCTAAAACAGAGGATGTTCGAGAAAAACTAGAAACTTTGGAAGCACATAAagcccaaaaaatgaaaaaattcttGTGTAACCTTTGTGGTCGTGCTTTTACAAAACATTACGGTCTGCAACGGCACCTTCTTACCCACAGTGAGGATAAACCCTTTCAGTGTTTACAGTGTAGCAAACCTTGGAAGCTTACACACAGTGAAATAATAGTAAAACCGGAACCTTTTTTGGAAATGACGCCAAAAGAAAATTTCTTAGAACCACCGCCATTGATACCGTTATTTACAAAGCCTTTACATAAAAGTTATTTAGCTGTACCGCCTTTAGCACCGATCTCTAAAAAGCTACCGTTACCTGAGGAACGACGTTTATATTCATGCCTTGTGTGTGATCAGATTTTTGTCACCAAAGAAAGTATCATTAATCACCTATATGAGCATCAAAAAAATTCAAACCTCAATCAGTTTAAAGAATactgtaaaatttgtaaaaaaggtTTTGACTCTCAAGAAGATTACTATAATCATTTACAAATCGTTCACGATAAAGATAAACAGACTTTTTGCTGTAGAGACTGTGGAAATTATTACAACTTAGAACTATTACATGAACACGAAAAAATGCACAGATCTGCTGAACATGAATTTTATTGTGATATGTGTGGAGAATATTTGACTACCAAGAGAAACTTGGACATGcataaaaaaaggcatttgaaggAGTTTAAAGGTTACTGTGACGTCTGCGATAAAGGTTTTGTACGTCATATGGATTACCGGTCACACTTACAAGATAGACATGaaccTACCATAGAACCTCCTGAAAGGTCGAAAAAGTGTCCTCATTGTCACAAGGCTTTTAAAAGAACTGGAGAATTGAACCGACACTTAATAATACACTCACCTGAGCGACCTTTCAAATGTAAAATCTGCAATAAAGGCTTTAAAGTAAAAACGACACTAGCAAAACATGAGGCAATACATACCATAAGACAAACTTTTCAATGTGATAGTTGTCAAAAGGTATTTCTTTCTCAACAGAATCTTGCTGTACATATTTTAAGACACTCGAACAGTTACGTTATGAAATGTGAACAGTGCGGCCagggattttttaataaagtacaTTACAAACTTCATGTCGAATCGGTGCATAAAAACCAAAGCATGTGTCACATTTGTGGCAAAAAGCTATCCAACAAATACAACCTTAAATATCATCTTATGGAGACTCATGGTCAAGGTCAACCGGTAGATCCAAAGGAATGTCCTATTTGCaacaaggaatttaaaaatatcagaattCATATGCGAAGGTTTCATGGTTCTAGGAAAAAGGCCAAATTTAGTCTGTGCGATCTTTGTGGCAAGGAATTTAAAACTAAAGAAGGTCTTAACATGCATTTAATGAAGCATCAAGGGATAAAGCCTTTTCAGTGTGAATATTGTGAAAAATCTTTTACtattaaagataatttaaaattacatattagAACCCATACAGGGGAGAAACCTCATCAATGCCcagaatgtaaaaaatgtttttctcaaATCACTCCACTTAAAATCCATATGAGAATGCATTCGGGGGAAAAGCCATATGGGTGTGAATTATGCAATTCGAAgctcAGTAATTTTCCAGATCTTGGAAACCTGTGCGAAATTCAAATCAAAGAAGAGTCACTGCCTTCAAATCTGgttataaaaacttttcaatgcaATCAATGCCTTCGATTTTTCGCCAAAAAGAAATACTTGGAGAGGCATATTAAAAACCACCTTCGTGAGTTGACACGGCCATTTAGATGTCTTCATTGTGACAAGGGCTTTACTACAAACTACGCCCTCAAAAGTCACATGTTTATACATGAAGACCGTCCTGCAACTTTTGTTTGTGATGTATGtcctaaaaaattcaaaagGCAGAAAAATTTGGTACTTCATCAGAAAAGACATTTGAAGGAATACGTTATAAAATGTGAAGAGTGCAATCAAGGTTTTGTTTGTAAGGGAGACTACATTCAACACATGAGAAACAAACAcgaaatagataaagaaaaggTAGTCTGTTTTATATGTGGTAAAGATTTTGTAAAAGGTCACTTCAAGAGGCATATAGCAAATGTGCATGGGGAAACTGGGGAGTTTCCCTGTGAGCTCTGTGGAAAAGTGTTTGACAGGAAAATTAGTCATGAAAGGCACGTGAAGATTTTTCATAATCTAACTCCTCAAGTGTGTGATATTTGTGGACAGGAGTTTAGGTGGAAGCATAGTCTAAGGGATCATCTTAAAATACATGCAGgtttaaaacCCCACCAATGTGTGTACTGCGAAAAGGCTTTTACAAGAAGTGATTTTCTAAAGCAACATATTAGGACTCACACAGGTCAAAGGCCATTCGAGTGTTCCGAGTGTGGTAAAGGATTTACTCAAGCCACTCCTCTAAAAGTTCACTTAAGAAGTGTCCACAAGAAAGATAAAGTTCCTTTAAAACTAGATGATGAGGTGTTTACAGAGGAAGACTCTCTACTACAAACCTAA
- Protein Sequence
- MCPLGCNSEEISKTEDVREKLETLEAHKAQKMKKFLCNLCGRAFTKHYGLQRHLLTHSEDKPFQCLQCSKPWKLTHSEIIVKPEPFLEMTPKENFLEPPPLIPLFTKPLHKSYLAVPPLAPISKKLPLPEERRLYSCLVCDQIFVTKESIINHLYEHQKNSNLNQFKEYCKICKKGFDSQEDYYNHLQIVHDKDKQTFCCRDCGNYYNLELLHEHEKMHRSAEHEFYCDMCGEYLTTKRNLDMHKKRHLKEFKGYCDVCDKGFVRHMDYRSHLQDRHEPTIEPPERSKKCPHCHKAFKRTGELNRHLIIHSPERPFKCKICNKGFKVKTTLAKHEAIHTIRQTFQCDSCQKVFLSQQNLAVHILRHSNSYVMKCEQCGQGFFNKVHYKLHVESVHKNQSMCHICGKKLSNKYNLKYHLMETHGQGQPVDPKECPICNKEFKNIRIHMRRFHGSRKKAKFSLCDLCGKEFKTKEGLNMHLMKHQGIKPFQCEYCEKSFTIKDNLKLHIRTHTGEKPHQCPECKKCFSQITPLKIHMRMHSGEKPYGCELCNSKLSNFPDLGNLCEIQIKEESLPSNLVIKTFQCNQCLRFFAKKKYLERHIKNHLRELTRPFRCLHCDKGFTTNYALKSHMFIHEDRPATFVCDVCPKKFKRQKNLVLHQKRHLKEYVIKCEECNQGFVCKGDYIQHMRNKHEIDKEKVVCFICGKDFVKGHFKRHIANVHGETGEFPCELCGKVFDRKISHERHVKIFHNLTPQVCDICGQEFRWKHSLRDHLKIHAGLKPHQCVYCEKAFTRSDFLKQHIRTHTGQRPFECSECGKGFTQATPLKVHLRSVHKKDKVPLKLDDEVFTEEDSLLQT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -