Pcer031709.1
Basic Information
- Insect
- Polydrusus cervinus
- Gene Symbol
- ZBTB41
- Assembly
- GCA_935413225.1
- Location
- CAKXYS010000925.1:119466-125351[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 1.2e-06 0.00013 23.5 0.8 3 23 2 23 1 23 0.97 2 23 5.4e-06 0.00055 21.5 2.4 1 23 29 52 29 52 0.98 3 23 8.6e-06 0.00088 20.9 0.6 2 23 58 79 57 79 0.97 4 23 1.3 1.4e+02 4.5 7.6 1 23 94 116 94 117 0.95 5 23 0.00029 0.03 16.0 1.3 2 23 125 146 124 146 0.96 6 23 4.1e-05 0.0042 18.7 2.7 3 23 152 173 150 173 0.96 7 23 0.019 2 10.3 0.1 2 23 179 200 178 200 0.97 8 23 0.17 18 7.3 0.7 2 23 209 228 208 228 0.85 9 23 1.3e-06 0.00013 23.5 0.2 1 23 235 257 235 257 0.98 10 23 4e-06 0.00041 21.9 3.2 1 23 263 285 263 285 0.98 11 23 0.16 16 7.5 0.1 1 15 291 305 291 308 0.86 12 23 1e-05 0.0011 20.6 0.2 3 23 331 352 330 352 0.97 13 23 1.2e-05 0.0012 20.5 3.0 1 23 358 381 358 381 0.97 14 23 2.1e-05 0.0022 19.6 2.1 2 23 387 408 386 408 0.97 15 23 0.00023 0.023 16.4 3.7 1 23 421 444 421 444 0.97 16 23 0.0012 0.12 14.1 2.6 2 23 452 474 451 474 0.93 17 23 3.5e-05 0.0036 18.9 1.4 2 23 479 501 478 501 0.96 18 23 0.00013 0.013 17.2 1.3 2 23 507 528 506 528 0.97 19 23 0.062 6.4 8.7 0.6 3 23 538 556 536 556 0.89 20 23 3.4e-05 0.0035 19.0 0.1 1 23 563 585 563 585 0.98 21 23 0.00015 0.016 16.9 4.6 1 23 591 613 591 613 0.98 22 23 1.2e-08 1.2e-06 29.9 0.3 1 23 619 641 619 641 0.98 23 23 0.00015 0.016 16.9 2.1 1 23 647 670 647 670 0.96
Sequence Information
- Coding Sequence
- ATGTGTCCTCTGTGTGGAAAGGGGTTCGATCACAGCAACGCATTGAATAGACACATGAAAACTGTTCACACCAACAAAAAACCTCATCAATGTCAAATATGTGGAAAAGCATTTAAATTGGAGTTCAACCTGAGCACTCACATGAAAACTAACCATCTTTCTATAGGACTTGAATGTAAAATTTGTggtaaaacatataaaaacgaaatgacattaaaattacatttaaaagtaCACAAGAGAAATAACGAATCGAGCGCAGGCATTGATGATCCCTCTTTCCATTGTGAAATTTGTGACTGTTGGTTTAAAACAAGCGATACGTTTGATCAACATACGCAAAAACATCACCCTGAAGCTCTACGAGAGTTGGAATGTAAATTTTGTcaggaaacgtttaaaaatatatcaagtcTGAAGTTACACGTTAAACAACATTTAAACGGCACGTTTTGTCAAATATGTGACAAACAATTTTCATCGCCACACAATTTTAGGATCCATGTGCAAACCAAGCATGAAGCTCGCACAGTTCCTtgtaatatttgtgaaaaattgttttccactGTCGGAATTATGGTTAAGCATCAAAGAACTCACAATGAAAAGCAAATGGAATTGCAAGAATGCCCATTTTGCAAAAAAAGGTATTCCCAATTACAAATTCATATTAAAGGTCAGCATGAAAGCGCTGGGGAAAGTTATGTATGCGATTTGTGTGGTAAAAACTTTAGAACAAAAGGTGGTTTAAAGTTGCACCTTATGGTACACCAAGGGATAAAGCCACATCAATGCAAAGAATGTGGCAAAGACTTTATTACAAATCAACACTTGATAGTACATGTACGTAAGCATACCGGAGAAACCCCGTTTGTGTGTGAGCTTTGTGGAAAAAGGGTTAAGAGAAAtggTTTAATAACAAGAGAATTAAAACATGGTAAACGTAGTCAAGTTACCATCAAACAAGTACTTATCCGCAAGGTTCTTTTATGCCCTTTTTGTGGAAAAGGATTTGATAGAAGCAATGGCCTGAAAAGGCATATGGCATCAGTACATTCTGAAGAACGACCACATACATGTCAGTTATGtagaaaaacctttaaattgaaaGGCAACCTAAATATTCACATGAAAACTGCTCATCTTTCTGTTGGTCTAAAATGCAAAACTTGTggtaaaacttataaaaacgaAACTTCACTAAAGTTGCATTTAAAACTACATGATTCTAAGAAAAAAGTTCGTCTTGGTGAGCGacctttttattgtaaaatttgtgATCAgggatttaaatcaaaaagtacttTTTATCAACATACACAGAAACAACATTATGAAGATCCGTTACCGTTGGAATGTAAATTTTgcgaagaaatatttaaaaataaatcaagccTAAAACTACATCATGTTAAACAACATTTGACGGGCACATATTGTCAAATTTGTGACAAACAATTTTCCTTGCCCCAAAATTATAAAAGCCATATGCAAACAAAGCATGGAACCCGTACTGTTCCCTGTACAATTTGTGACAAAATGTTTCCTACTATGAGACACATGCTTCAGCATCAAAAGATGCATCAAGAAAAGAATGTTACACTTCAGAATTGTccatattgtaataaaaaatatgcccAGTTAAAAGCTCATATTAAATTATACCACGAAAGTGATGGAAAGAACTTTGTATGCGATCTCTGTGGTAAATATTTCATAGGAAAGAGTGGTTTACAACTTCACCTTATGGTCCATCAAGGAATTAAACCACACCAATGCAAGGAATGTGGAAAAAATTTTCTCACGAATCAGCATTTGATAGTTCACACACGTACGCATACCGGGGAAACTCCATTTGTGTGTGAACTTTGTGGTAAAAGTTTTACTCAGAAGGCAGCACTCAATAGACATATGAGATGGCACTCTGGAGAGAAATCATTTAAATGCGAAATTTGCTCCATgggtttttatgataaaaaatatctaaacagACACTATAAGGCCAAGCACACCGGCGACATaattcaataa
- Protein Sequence
- MCPLCGKGFDHSNALNRHMKTVHTNKKPHQCQICGKAFKLEFNLSTHMKTNHLSIGLECKICGKTYKNEMTLKLHLKVHKRNNESSAGIDDPSFHCEICDCWFKTSDTFDQHTQKHHPEALRELECKFCQETFKNISSLKLHVKQHLNGTFCQICDKQFSSPHNFRIHVQTKHEARTVPCNICEKLFSTVGIMVKHQRTHNEKQMELQECPFCKKRYSQLQIHIKGQHESAGESYVCDLCGKNFRTKGGLKLHLMVHQGIKPHQCKECGKDFITNQHLIVHVRKHTGETPFVCELCGKRVKRNGLITRELKHGKRSQVTIKQVLIRKVLLCPFCGKGFDRSNGLKRHMASVHSEERPHTCQLCRKTFKLKGNLNIHMKTAHLSVGLKCKTCGKTYKNETSLKLHLKLHDSKKKVRLGERPFYCKICDQGFKSKSTFYQHTQKQHYEDPLPLECKFCEEIFKNKSSLKLHHVKQHLTGTYCQICDKQFSLPQNYKSHMQTKHGTRTVPCTICDKMFPTMRHMLQHQKMHQEKNVTLQNCPYCNKKYAQLKAHIKLYHESDGKNFVCDLCGKYFIGKSGLQLHLMVHQGIKPHQCKECGKNFLTNQHLIVHTRTHTGETPFVCELCGKSFTQKAALNRHMRWHSGEKSFKCEICSMGFYDKKYLNRHYKAKHTGDIIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -