Pcer011938.1
Basic Information
- Insect
- Polydrusus cervinus
- Gene Symbol
- -
- Assembly
- GCA_935413225.1
- Location
- CAKXYS010000239.1:76243-76986[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.1e-07 6.1e-05 24.0 0.1 2 38 15 51 14 56 0.91
Sequence Information
- Coding Sequence
- ATGAGAAATTACAAAAGAAAGTCAAATCAAAATGCTTGGTCAGAAGCGTCTATGAAAGCCGCTATAAGATCTGTTAGATCACAAGAATTATCCCAAAACGCTGCTGACAGACAATTTAGCGTACCAGTGGCTACATTAAACCGGCGTATTAAAGCTGGAAAAGATGAGGAAGAGGGAAGTCGAAAAAAGCTAGGCAGGTTCACTACAACTTTTTTAGAAGAGCAAGAAATCGAGTTATGTAATCATGTCTTGCAATtggaaaaaaggttttttggtGTTTCTACATTTGAACTTAGATCCCTTGCCTACCAATATGCtgtgcaaaataaaattataaacaattttaatgacgaaACCGAATTAGCAGGAACCGACTGGAAGTATGGTTTTATAAGGCGCAATCCACGAATTTCTCTCCGTACACCTGAAAATACATCAGCTGCACGTGCTTCTGGTTTTAACAAAGTCTCAGTTAAAGCGTTTTTTGATCTATTAGGTTCTCTTTTAGATCAATACAAATTTACACCTAGTCGGATTTATAATTGTGATGAGACGGGAATCACAACCGTTCCTAATAAAccgacaaaaatattttctcttaaaGGAAAAAAACAGGTCGGCTGTTACACGTCCGGGGAAAGAGGAACTTTGGTCACAGCCGAAATTTGTTTTAACGCTACTGGTCACTATGTTCCTCCGCTTTTAGTGATTCCTCGTGTAAGAAGAAATAGGATTACCGACTGA
- Protein Sequence
- MRNYKRKSNQNAWSEASMKAAIRSVRSQELSQNAADRQFSVPVATLNRRIKAGKDEEEGSRKKLGRFTTTFLEEQEIELCNHVLQLEKRFFGVSTFELRSLAYQYAVQNKIINNFNDETELAGTDWKYGFIRRNPRISLRTPENTSAARASGFNKVSVKAFFDLLGSLLDQYKFTPSRIYNCDETGITTVPNKPTKIFSLKGKKQVGCYTSGERGTLVTAEICFNATGHYVPPLLVIPRVRRNRITD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01238695;
- 90% Identity
- iTF_01187482;
- 80% Identity
- -