Pcer006885.1
Basic Information
- Insect
- Polydrusus cervinus
- Gene Symbol
- -
- Assembly
- GCA_935413225.1
- Location
- CAKXYS010000119.1:2284689-2285219[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.4e-07 4.7e-05 24.3 0.1 4 42 19 57 17 60 0.93
Sequence Information
- Coding Sequence
- ATGGTTCGAAACTACGTCCGAAAAAGCAAAAGGGCCACTTCCTATACAAAAGTCGATTTAGAGCGAGCTATGGAGGAGGTTAGGAGTGGAAGAATTACAGCATACAAAGCCAGTAAAAGGTTTAAGATTCCTCAGATGACCCTGAATTATCACTTAAGAGGTATTCGAGGCGCAAAAAGTAGTAGTCAAGGTAGAAGTCCAGTTATTCCGATAGATTATGAAAGAAAACTAGCAGATGGTTTGAAAATTATGGAAAAATGGGGTTGGGGTTTAAGTCGGGGCAAAGTGCTGAAAATTGTTGGTGATTATGTTAaacgaaataaattaaaaactcctTTTAAAGAGGGATTGCCGGGCGAAGATTGGTTTCTTGGGTTTTCAAAGCGACATGGTTTGTCCATTAAGAAGCCACAGTCAGTAGAATACGCCCGCAAAAAAAGTTTGGACCCGTtcattataaacaaatattttgaattattaaaaaatatcatggATAACTTGGGCTTGCATGATAAGCCACACCTAATTTGA
- Protein Sequence
- MVRNYVRKSKRATSYTKVDLERAMEEVRSGRITAYKASKRFKIPQMTLNYHLRGIRGAKSSSQGRSPVIPIDYERKLADGLKIMEKWGWGLSRGKVLKIVGDYVKRNKLKTPFKEGLPGEDWFLGFSKRHGLSIKKPQSVEYARKKSLDPFIINKYFELLKNIMDNLGLHDKPHLI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01242572;
- 90% Identity
- iTF_01242441; iTF_01242572; iTF_01238909;
- 80% Identity
- -