Pcer019553.1
Basic Information
- Insect
- Polydrusus cervinus
- Gene Symbol
- -
- Assembly
- GCA_935413225.1
- Location
- CAKXYS010000448.1:177464-181582[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.0067 0.58 11.2 0.0 4 31 21 48 20 48 0.94 2 2 0.0014 0.12 13.4 0.1 4 28 62 86 59 87 0.92
Sequence Information
- Coding Sequence
- atgCCACGCAAGTATAAGAGGAAGGAAGGAGAGAAAAAGAGAAAACCCATAGATGGCCAGAAACTAAAAGCAGCAGTTGTTCATGTCATCAACGACAATGCATCATTAAAAAGTGCTGCTAGAAGATTTGATATGCCCAGGAACTACAGAAAAAAGACCAATCGCTGCGAcattagtaaaaaaaacatgaagTTGGCAATTAAAGCTGTATTGACTAGGCGTTTAAGTCAATACAAAGCTGCCCAAGATTATCAAGTAACATCCGCATTGTGCCAAATAAGGCCATATCCAAAAGTACAGcacgaagaaaagaaaaaagtaagaaaGAGAAAATCGCAGTTAACAATATATACATATACGCCAGAATACGAAAAAAGACAATCTTTAGAAGCAGAACGGagcagaaaaaaaagtttaaaacagaaGAAGGCATCAGTCAAAAAAGATTTGATGGTAGtggataaaaaaagaaatatttctatGTCCAGCGAGTCAAGCACTGAAATTGTTATACAAGATTCGTCTGACGACTATGACGAAGATTTGTTTGAAGACTTAAAACTCATCTCTGACAATGCGAATATTGCCATAGGAAATTTTgttcttgttaaatttaatagttccAAGGTGGAAATTTTTTACGTGGGTAAAATAACTTCTGTCCAAGATGAGGAATATGAAATTACTTTTCTACGCCGTAAACGCAACACAAATAGCTTTTTATTTCCTACTGTCGAAGATATTTCAGTTATAGAGAAAAAAGATATTGTAGCAGTTTCGCCTTTCTCCTTCCACTCACGGAAGTGCAAAGACGTCaagtctttttaa
- Protein Sequence
- MPRKYKRKEGEKKRKPIDGQKLKAAVVHVINDNASLKSAARRFDMPRNYRKKTNRCDISKKNMKLAIKAVLTRRLSQYKAAQDYQVTSALCQIRPYPKVQHEEKKKVRKRKSQLTIYTYTPEYEKRQSLEAERSRKKSLKQKKASVKKDLMVVDKKRNISMSSESSTEIVIQDSSDDYDEDLFEDLKLISDNANIAIGNFVLVKFNSSKVEIFYVGKITSVQDEEYEITFLRRKRNTNSFLFPTVEDISVIEKKDIVAVSPFSFHSRKCKDVKSF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -