Pcer005457.2
Basic Information
- Insect
- Polydrusus cervinus
- Gene Symbol
- -
- Assembly
- GCA_935413225.1
- Location
- CAKXYS010000101.1:255789-260439[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.03 2.6 9.1 0.0 3 24 17 38 15 39 0.87 2 2 0.00015 0.013 16.5 0.0 12 35 533 556 531 559 0.91
Sequence Information
- Coding Sequence
- ATGGTTCGAGTGTACAAGAAAAAGACTGAAAGGGCTAAAATAGATGAAAAGGCTATAAATTGTGCAATAGAAGATGTAATCGAAGGAAGACTATCAATAAGAATAGCCGCTGAAAAAATAGTAAATTTTGATGAAACCGGTATTACTACGGTCCTTAACACACCTAAGGTTCTGGCGGAGAAAACTCAGCGACAAGTCGGTCAGATTGTGTCTTCCGAAAGAGGTGAACTAATTACATTTGGGGGCATTATAACTGCTATTGGAAATACAATTCCGCCCATTTTTGTATTTCCAAGGGTTAATTACAAAAGCCACTTTCTGTTGGGTTCACCAGAAGGAAGTTTGGGATTAGCATCGAGAACCGGATGGATAAATGGTGACCTTTTTTTGGAGGTCTTAAAACATATACAAAAACATATGAATAGTACAACAGAAAGACCCATCTTATTACTTTGTGACAACCATGAATCTCATATTTCTATAGAGGCAATCAATTACTCACGTGAAAATGGCATTGTATATTTGTCCTTTCCTCCTCACACCTCCCATAAACTACAGCCTTTGGATGTGGCTGTTTTTGGGCCATTTAAGTGTAAGCTGAAGGTAGCATTTAATGACTGGCACATTAATCATCCGGGGAAAGCACTATCAATATATGAAATACCGCCATTAGCTAAATTAGCATACTTTGAGTCATTTACCGTTAAAAATATTACCAGTGCCTTTACAAAGCCGGGTATATGGCCTTTCAATAAATTAGCCTTCTCAGATGACGACTTCGCACCTTGGGATGTGTACATTAACAAACAGTCTCAGGATAATACGACAGATGTAGATCTTGAACTTCAGATTTCAACTAGCAATGACATCGAGCCAGAATCACACTTAACATTAACCCTGACTCCGAGGCATTTTACACCTCCACCAATTGATATTGATGCTAAAAGGTTGGTACAACCTGAACCAATACCCTCAACGTCAAACGCTATAACACCTGAATCTGTTAGGCCATtgccaaaaattattaaaacagttCTAAAGAGGAAGGGAAAAGAAAAGGGAAAATCAAGAATCTACACCAACACGCCAGAAAAAGAGAGGCTTGAAGAATTGGCAAAAATAAAAGAACTAAAAAGGAATAGGAAAGAACAGATACAACGCATAAAAGAACTTAAAACAGCAAGAAAGTTACTAAGTTTGTGTCCAGAATCTGATGTTCgtgccaaaaaaataaaaaagagaaaactgTCTGAAATAAGCAGTAGTTCCTCAAGTTGTACCAGTGATTTTGAAGTTAAAGATTTTTCATCAGACTCAAACTTTTGCCCATCTGAAGACGAAGCTTCTGACAATCAACTGAcgccaattaaaataaaaccagaaaatttaaaagaaggaGATTTTGTCCTTATTAAGTTTGAAAAGAAGAAAAGCATAAAACACTATGTTggtaaaattcttttaaaatatgataGCAGCGAATACCAAGTTTCGTATCTGAGAAAAAAACCGTCAGGTAGCTTTGTCTTTCCAGATGTGAAGGATGAAGCCTCAGTTAACATAACTGATATAATACTACAGCTGCCAATGCCAACCGTTACCAATGGAGAAATTGGAGTGAATGAAGCTGCACGCATTTATGGGATCCTATCCCGAACTTTGCGGCGAATAAGGTGTACGGTAGTCATTGCAGAGTTGCCATTGGGTCCACAGGGGATATTGGGAGTAGGCAACGAAAAGAGGCTCGTTAAGCACATCCAAAAAATGGAAAAAGCCAGATTTGCGATTCATAGGGAAACACTACGATCGTTAGCGTTTCGGTTCGCTGATATGTTAGGAATTCAGCACCGCTTCAATTGTGAAACGCGCATGGCAGCTTACGACTGGGTGAATTATTTCTTGAGAAGAAATAAGGAGTTGAGCATCAGACAGTCTCAAGGGATATTACTTGCCCGATGTGAGGGAATGAACCGAGAGGAAGCTAATGCATTCTTCAATTTGCTTTCTGACGTTTATAGCGAATTCAACTTTTTTGACCACCACGAACTTTACTTGTTGACTACATTTTAA
- Protein Sequence
- MVRVYKKKTERAKIDEKAINCAIEDVIEGRLSIRIAAEKIVNFDETGITTVLNTPKVLAEKTQRQVGQIVSSERGELITFGGIITAIGNTIPPIFVFPRVNYKSHFLLGSPEGSLGLASRTGWINGDLFLEVLKHIQKHMNSTTERPILLLCDNHESHISIEAINYSRENGIVYLSFPPHTSHKLQPLDVAVFGPFKCKLKVAFNDWHINHPGKALSIYEIPPLAKLAYFESFTVKNITSAFTKPGIWPFNKLAFSDDDFAPWDVYINKQSQDNTTDVDLELQISTSNDIEPESHLTLTLTPRHFTPPPIDIDAKRLVQPEPIPSTSNAITPESVRPLPKIIKTVLKRKGKEKGKSRIYTNTPEKERLEELAKIKELKRNRKEQIQRIKELKTARKLLSLCPESDVRAKKIKKRKLSEISSSSSSCTSDFEVKDFSSDSNFCPSEDEASDNQLTPIKIKPENLKEGDFVLIKFEKKKSIKHYVGKILLKYDSSEYQVSYLRKKPSGSFVFPDVKDEASVNITDIILQLPMPTVTNGEIGVNEAARIYGILSRTLRRIRCTVVIAELPLGPQGILGVGNEKRLVKHIQKMEKARFAIHRETLRSLAFRFADMLGIQHRFNCETRMAAYDWVNYFLRRNKELSIRQSQGILLARCEGMNREEANAFFNLLSDVYSEFNFFDHHELYLLTTF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -