Pcer034480.1
Basic Information
- Insect
- Polydrusus cervinus
- Gene Symbol
- -
- Assembly
- GCA_935413225.1
- Location
- CAKXYS010001077.1:238294-238764[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.5e-09 1.3e-07 32.5 0.0 2 37 10 45 9 50 0.92
Sequence Information
- Coding Sequence
- ATGCCTAAAAAACACAAGAAATGGGACCCTCACGCTATGGTGAAAGCTGTGAAGGCTGTGCGTAATAAAGAGATGGGATATCAAAAAGCCTTAAAAGTTTTTGGTGTACCTAAAGGCACTGTGGAAAGATACTCAAAGTCAGATAAAAGCCCAGAAGAACTTGTCACACTATCGATAGGCTGGAAACCAGTTTTTTCTGAACAACTAGAAAACAAACTAGTTCAGTATGCATTAGCCATGGAACAACGATTTTTTGGTCTGAGGTCGGGCGATATTAAACGAATGGCATTCCAACTGGCAATTAGAAATAAGTTGCGGCATTCATTTAATGGAGTAAGTAAATCTGCTGGGAAAAGATGGTTGAGGTTATTTTTGAAGAGGCATCCACAACTTTCGATGAGAACACCCCAAGGAATGTCTGCAGCTCGTATCAAATCTTTCACTCCCGAAAAAGTCTCAGcgtttttttaa
- Protein Sequence
- MPKKHKKWDPHAMVKAVKAVRNKEMGYQKALKVFGVPKGTVERYSKSDKSPEELVTLSIGWKPVFSEQLENKLVQYALAMEQRFFGLRSGDIKRMAFQLAIRNKLRHSFNGVSKSAGKRWLRLFLKRHPQLSMRTPQGMSAARIKSFTPEKVSAFF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00977586; iTF_00415964;
- 90% Identity
- -
- 80% Identity
- -