Pcer014548.1
Basic Information
- Insect
- Polydrusus cervinus
- Gene Symbol
- -
- Assembly
- GCA_935413225.1
- Location
- CAKXYS010000296.1:555611-557554[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1e-11 8.6e-10 39.5 0.1 1 38 12 49 12 53 0.92
Sequence Information
- Coding Sequence
- ATGGCACCTCGGAAAACAACTCGTCAGTCTTGGTCCGAGGAAAGAATGGCGGAAGCAATCAGATCGGTTTCGAGTGGCAAATATGGTTATTTAAAAGCGGCAACAGTTTTTTCTGTACCAAAGAGCACCCTTGAGCGGAGAGTGAAAaacttaaacaaaaacattaccGGGCATGAAAAAGGCTTGGGAAGTCGACAACGAACTTTTTCGCGCCAAATGGAAGAACAACTAGTTGACTACGTAAAAACTATGGAGAGCATGCTTTTTGGGTTAACGTGTACAGATGTGCGTAGGCTGGCGTTTCAGTTAGCAGAAAGGaacaatttaaaacattattttaatgaaaataaaaaaatggctGGTTGGGTTTGGCTCCGATCATTTATAAATAGAAATCACCTTTCCCTAAGGAAACCTGAAGCAACATCGGCAGCTTGCGCTAGGGGCTTCAATAGAACTGCCGTGGGAAAATTCTTTGATTTGCTGGAGCCCCTGCAAGATAGATACGCGTATACACCATCTAGAATATTCAACGTTGATGAGACGGGCTTAACAACTGTACAGGGGCGTCCATCTAAGGTGATTGCTATGAAAGGTAGGAAGCAAGTAGGAACGTTAACCTCAGCAGAACGGGGGACACTATGCACTGCGGTAATATGCATGAGTGCTGCAGGGACATATGTTCCACCCATGATCATTTTTCCCAGAGTTCGTGCCAAGGAAGAATTTTCGACTGGGCTACCCCCTGAATCCATAGTTGCCTACCATCCTACTGGTTGGATGCAATtgaatctcttcgaaaagtggTTTAACCATTTTTTACAATCTACCAATGCCTCAAAAGAAAATCCTTCGTTACTTATAATGGATGGTCATAAAACTCATACTCAAAACATAGCTGTAATAGAAAAAGCCAGGGATCACGGTGTTACAATGTTGTGCTTACCGCCACATTGTAGTCACCGCATGCAACCGCTAGACGTTTCTTTTATGGCTCCTCTATCGACATTCTACAGCCAAGAGGTTGAAACATTTCTAAGGAATAATCCAGGTAAAGTCGTCACAATTTACCACATAGGCAAATTATTTGGAAAGGCCTTCTTAAGGGCAGCAACACCCAATAATGCAATtcatggttttgaaaaaactggCTTATTTCCCGTTAATCGCCACGTTTTCACTGATGACATGTTTATAGCTGCTGATCCCACTGATCAGCCAGAAAATGAATCAACTTTAACAGAAGAGGGTTCACCAGAAAGAGAACCATCATTTGCAATCAGGCACCAAACACCACCTCCATCAACTTCATATTCTGCCCACACACTGCCAAAATCAAAATCAACTTGTCCTCATGAGTCAGATGACAGCTTCTCCAGTGATGATGATAAACCTCTGAGCAAAATTCTTAAAGATTATGTTTCACCAGAAATGATTCAACCATACCCAAAAGCAGCATTAAGAAGGCCTGTGAAAACTGCAAGGAGAGGTAAAGCTGCCATCTTAACGAGCACACCTTATAAGAATGAACTGAATGCCAGTTTAGAGGCGAAACTACGTAACGTGCCAACCAGTAAATTGCCATCTTTGAAAGGAAAGGGACTTTTGACGGGAGAATCGGTAAAGAAAATCTCCAAACCACAGAAAAATAGTTCGACCGAAAAGAAGACCGGTGAAGCAACAAACAAAACTAGGGACCAAGAAGATGTGAATGGGAAAAACAAGACCAAGgacaaaaataccaaaaaaatatgcATAACCAAAGAAAACAGTGACGATGAAGAAAATCCTGTGTGCTTTTATTGTGAAGTAGATTTTCTAAGTAGCAAACCTGGTGACCCGTGGATTCGGTGTACTTCCTGCCAGAGATGGGTCCACGAAGCTTGCGGTGTATCAAAAAACGAagacaattattttatatgtgATCTGTGCTTGGAAATATAA
- Protein Sequence
- MAPRKTTRQSWSEERMAEAIRSVSSGKYGYLKAATVFSVPKSTLERRVKNLNKNITGHEKGLGSRQRTFSRQMEEQLVDYVKTMESMLFGLTCTDVRRLAFQLAERNNLKHYFNENKKMAGWVWLRSFINRNHLSLRKPEATSAACARGFNRTAVGKFFDLLEPLQDRYAYTPSRIFNVDETGLTTVQGRPSKVIAMKGRKQVGTLTSAERGTLCTAVICMSAAGTYVPPMIIFPRVRAKEEFSTGLPPESIVAYHPTGWMQLNLFEKWFNHFLQSTNASKENPSLLIMDGHKTHTQNIAVIEKARDHGVTMLCLPPHCSHRMQPLDVSFMAPLSTFYSQEVETFLRNNPGKVVTIYHIGKLFGKAFLRAATPNNAIHGFEKTGLFPVNRHVFTDDMFIAADPTDQPENESTLTEEGSPEREPSFAIRHQTPPPSTSYSAHTLPKSKSTCPHESDDSFSSDDDKPLSKILKDYVSPEMIQPYPKAALRRPVKTARRGKAAILTSTPYKNELNASLEAKLRNVPTSKLPSLKGKGLLTGESVKKISKPQKNSSTEKKTGEATNKTRDQEDVNGKNKTKDKNTKKICITKENSDDEENPVCFYCEVDFLSSKPGDPWIRCTSCQRWVHEACGVSKNEDNYFICDLCLEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01241890;
- 90% Identity
- iTF_01238507;
- 80% Identity
- -