Plab039102.1
Basic Information
- Insect
- Pollenia labialis
- Gene Symbol
- -
- Assembly
- GCA_949318255.1
- Location
- OX439143.1:22095096-22108592[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.15 21 7.3 3.3 2 19 487 504 487 506 0.94 2 14 4.1 5.7e+02 2.8 0.4 3 23 549 570 548 570 0.93 3 14 0.034 4.7 9.3 0.5 2 23 577 598 576 598 0.96 4 14 0.001 0.14 14.1 1.6 1 23 605 628 605 628 0.96 5 14 0.00078 0.11 14.5 2.8 2 23 636 657 635 657 0.97 6 14 0.015 2 10.5 5.0 1 22 707 728 707 731 0.91 7 14 0.0076 1.1 11.4 3.9 1 23 736 758 736 758 0.96 8 14 0.0083 1.1 11.3 0.6 1 23 774 799 774 799 0.97 9 14 0.011 1.5 10.9 0.7 2 23 812 834 811 834 0.95 10 14 0.01 1.4 11.0 2.2 2 23 840 862 839 862 0.95 11 14 6.7e-05 0.0093 17.8 2.3 2 23 866 888 865 888 0.96 12 14 0.017 2.3 10.3 5.6 1 23 894 917 894 917 0.97 13 14 0.0012 0.17 13.9 1.7 1 23 927 949 927 950 0.96 14 14 2 2.8e+02 3.7 0.4 2 23 956 984 955 984 0.84
Sequence Information
- Coding Sequence
- ATGGCGCTTAGAGTTCCATCAACAACCAGTGTTTGtttatattgcaaaataaattctGATGCTAATGCTGGAAAGGAATttcatgaaatatttgatgaagTGGGTCAAGAATTGCAATTACCCTTCTTagtcaaaacattttttcacattaatttaaaaaaaaggggcAAACAACATCTTTGTGATGATTGTGTTAATCGTTTAATAGAATTATATGATGTGGTGGAGCACGCCAAAGAGGAAAGTTGTaagacaaataatttaaaaaataagtcggAATGTATTAATAATGAAGAAAGTAGTAAATTCTCTAAAAACGAAAGTGGACATTTTAGATACGAACGTGAAAACTTTCATAAACCTTTTGTTATTGATCAAAATAATACTCAAGTTAATTTACCCAAAAGTAATTCCATTGCATacacaaactttaaaatttttgcatcaACACAAGGAGAAAATGCAATGAAAATGAATGAACAAAATAGATCTGATCGTACGGAATATGAAAATGtaggatatatttttaaacaaaacagctCTGCACCTTTTACACAACAACACAACCAAAGAAGAAATGATATTGCTGAGGATTTCCCAAAAGAGGATTTTGAACAAAACGGTGAAAGGAAAGTTTCACAAGATTTCAATGTTTCATTATTGTTAAGTGCAATAAAGGATCAAAAATCAGATGTTCTACAATACGGTGAACATATTGAATTTATCGTCGACGATGGAAcccaaaatatgaaaataaacaaacattctAATATAAACATCATAATTGgttctaaaaaatttgaaataaaagaaagtGAAGTTTCAAGAGATTTCAATATTTCTTCATCGTTTAGTAAAAAATCAGATAAACTGGAATCCAATGAACATATTGAATTTATCAGCGATGATGAAAACCAAAATGTGGAAATTAACCATCAGTCTAATACAAACAAAGTAGCCaaatttcataacaaaaatgAAGTCCAGAAAGATTTATATGTTGAAGAAGTCGATGATCGTTCAATTCAAGTTTTAAGCATTAATGATTCAAACTCATTTCTGGAAGAACTTAAAATAACCGACGAAACTGAAGCTTCATTATTAAGTGAAGAAATTTCTAATGAAAATTGTTCATTGGAAGAAGAGTATTTAATAGAAGaaattattTCGTCTAAGGAATATGATCAAGTTGATTTGAATGAGTATTTGGATAAAGTActaataacaaaatttcaagACTTGCTGTTAAATTGGGAAATGGAATGTAAAttgtgCCTTGGAAAATATTACTCCCTTGGGGAATTATTAAATCATGTGTGTATGACAGAATTCAAAAAGGAGCAACAATTCTCTTGTATTATTAAAGATTGCCAAGAACATGCAAAAGATTTACCAACTTTAGGAAGACATTTAGTACTAAAGCATTATGACAAATTAGAAAGtacccCCATTTATGGTAGATGTACAGAGTGccgaaaaacattttcaaatgttttagaTTTTAATAAGCACTCTTGTtgccaaaatataaaacaaataattggtACACCTAAGTATTGTAAATATTGCGATTTGGATTTTCAATCTTCAAAAAGatATGTCTTTCATATGCAGTTCCATTTAAAAAACCACAGGCCAAAAATTTGCTTATTATGTGGTGATTTATTCAATAATTCTAATGATTTCTTTGAACATACTCAATATACACATAACCATAAATCTGCTCTGACTTGTGAAagaTGTGATCGCCTTTTTAAGGatatacaagtttttaataatcaTATGGAAATGCATGAATATTCTAAATATCAATATGAATGTGCACTTTGTACAAAAAAGTATGCcaataaatttggtttaaatcaaCACATGGATGTTTGTCATAACAACAAATCTAAGGCCTTACAATGTGAATATTGTACAAAAAAACTACGTAATAAAACGATGTATCGGAATCATATTAAATCTCATGTTACAGACGCCAaagtaaaaacatttatatGCTCAACATGTGGattaataagtaataaaatggaaattataaaGCATCATATTGAGTCAGAAAGTGAATCTCCTTGTTTTTCATCGGCGGTAGACGAGAAAATTTTAGGTTTGGTTTATTCATGTGAAAattgttccttagatttttgtacaaaaaaacatCTTAAAGATCATCGTTTAAGTGATAGTCACagtgatgatttatttttttgtggtaTGTGTAGAAAAAGCTTCAAGACTTTACGTTACATGCGTAATCATTACCTATATCACAAGGAATGTAAAGAATGGCAGGAATCATTTCCAATAACTAAACATTTTGTATGCAATATAggggaTTGTCAAGAGTTTTATTCCTATTGGACCGCTTTATATAATCACAAAAAACGTTCTCATAAAactgaagaaaaaacaaattctccCACCGAGCTTAAATGCCAATTTTGTCAGCAGATGTACCCTTCACAACGGTCTTTGTCTGTTCACTTGGCTAAAAGTCATGATCACaCaagtattaaatgttcatattgcaaaagaaatttcaattcccgcaatattttacaaaaacatattgATAAATTTCATACACCCGTTGAATGTGATACCTGTGTAAAGAAATTTAAGCATCGACGCAATTTAGAAACACACATGAATTCCGTACATAATAATATAAAgcgttatttttgtaaatattgccaAAAGGGATATTATCATAAGAGTCAAAGAACTAACCATGAAAATACACTTCATATGGACAGACATGATAATcagcttaaatttaaatgtgtaaTTTGTAGCAAATCATTTGAACGCAAACCAATATTAGAGATTCACTTGAAAAAACATCATAATAAAAGGAActACAGCTGTTCCCGTTATTTAAATGAAAGTGGATGTGATGCttcttttttgacttatgaTCTAATGAAAAAACATGCACAAACTAAGCATGAAAACTCCAGTTtaagtattaatttaaaaagagaaGAACAACGAAAAAAAGATCATGAAGTTGTGCAATTTGAGAATTTGACTCGTGCCGATAGCAGTAAACATGAAAAACAGCCTAAAACATCAcatcaaattgaatttaatcATGAAGATTTCGAACAAGATTCTATTGTTTCAAGCTTGGAAAATGACATGGAATTCGAAGAACAGAAACCTGATACTGACAATTTAACAATATGA
- Protein Sequence
- MALRVPSTTSVCLYCKINSDANAGKEFHEIFDEVGQELQLPFLVKTFFHINLKKRGKQHLCDDCVNRLIELYDVVEHAKEESCKTNNLKNKSECINNEESSKFSKNESGHFRYERENFHKPFVIDQNNTQVNLPKSNSIAYTNFKIFASTQGENAMKMNEQNRSDRTEYENVGYIFKQNSSAPFTQQHNQRRNDIAEDFPKEDFEQNGERKVSQDFNVSLLLSAIKDQKSDVLQYGEHIEFIVDDGTQNMKINKHSNINIIIGSKKFEIKESEVSRDFNISSSFSKKSDKLESNEHIEFISDDENQNVEINHQSNTNKVAKFHNKNEVQKDLYVEEVDDRSIQVLSINDSNSFLEELKITDETEASLLSEEISNENCSLEEEYLIEEIISSKEYDQVDLNEYLDKVLITKFQDLLLNWEMECKLCLGKYYSLGELLNHVCMTEFKKEQQFSCIIKDCQEHAKDLPTLGRHLVLKHYDKLESTPIYGRCTECRKTFSNVLDFNKHSCCQNIKQIIGTPKYCKYCDLDFQSSKRYVFHMQFHLKNHRPKICLLCGDLFNNSNDFFEHTQYTHNHKSALTCERCDRLFKDIQVFNNHMEMHEYSKYQYECALCTKKYANKFGLNQHMDVCHNNKSKALQCEYCTKKLRNKTMYRNHIKSHVTDAKVKTFICSTCGLISNKMEIIKHHIESESESPCFSSAVDEKILGLVYSCENCSLDFCTKKHLKDHRLSDSHSDDLFFCGMCRKSFKTLRYMRNHYLYHKECKEWQESFPITKHFVCNIGDCQEFYSYWTALYNHKKRSHKTEEKTNSPTELKCQFCQQMYPSQRSLSVHLAKSHDHTSIKCSYCKRNFNSRNILQKHIDKFHTPVECDTCVKKFKHRRNLETHMNSVHNNIKRYFCKYCQKGYYHKSQRTNHENTLHMDRHDNQLKFKCVICSKSFERKPILEIHLKKHHNKRNYSCSRYLNESGCDASFLTYDLMKKHAQTKHENSSLSINLKREEQRKKDHEVVQFENLTRADSSKHEKQPKTSHQIEFNHEDFEQDSIVSSLENDMEFEEQKPDTDNLTI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -