Plab039539.1
Basic Information
- Insect
- Pollenia labialis
- Gene Symbol
- grau
- Assembly
- GCA_949318255.1
- Location
- OX439143.1:31482439-31485582[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 1.8 2.5e+02 3.9 0.4 6 23 335 352 335 352 0.94 2 9 0.0013 0.18 13.8 0.6 1 23 358 380 358 380 0.97 3 9 0.00068 0.094 14.7 2.2 1 23 388 410 388 410 0.96 4 9 8.6e-06 0.0012 20.7 1.1 1 23 418 441 418 441 0.97 5 9 0.00021 0.029 16.3 0.2 3 23 449 469 448 469 0.97 6 9 0.014 1.9 10.6 0.0 2 23 478 500 477 500 0.93 7 9 2 2.7e+02 3.8 1.7 1 23 508 531 508 531 0.89 8 9 2.1e-06 0.00029 22.6 0.7 1 23 537 559 537 559 0.98 9 9 6.2e-06 0.00086 21.1 1.9 1 23 565 588 565 588 0.98
Sequence Information
- Coding Sequence
- ATGGAAGGTTGTATACTATGTCTAGAACTAAAGCAGGAGAGAATTAAcaattgtattattataaattccACCCAATGGCACGaactaaatgtaaaaaatattttggaaaaacattTATGGACCATGGCTCACCTCGGGGATACCTCATGGTTATGTACCACTTGTTGGAGAGAGTTATTTGAATTCCACAAATTCTATAAGCGTATAGAAGAAGCGCATATAGATTTTGGACTAATCGCACATAATATATTGAATGTAGAGATAAATGTGTACAACAAAGATGAATGCCAATCCAATGAAGTAGCAGAATGTTCAATAAATGAATTAGAAGAAAGTACACCTGATAAATTACATGAGAGCCCAGTGaatgaattaaaagattttttaaaggaatatgaTAATAACTTACCAATTGATATAATAGCAGATGAACAGAAACCTTTTattaaacatgaattaattGAAGAACCATTAAGCAAAGAAAATCCTCTAGAAGAAAAACGTAAACGAGGACGACCACGTAAAGATAACTTAATTGGGACTATTAAGTCTAAAAGTACtaggaaaaccaaaaaatacaaaaaaaagttattcaatgATGTATCAAGTGATCACGAAGtttcgaaaacaataaaaaaacgctaccgaaagaaaattaataaaatttttaataatgataTTGAAACTAACGTAAATGATATGATTTCTTCAGAAATTAAGCATGAAATCAATTTGTTATCTTTATCCGAAGatcctaaaaatttatttgataatgATACTGATTCTAATATTGATACGGATGGGGAAATCTTAGAACGTGATGATATTAAATCTAAATCTAGTCTTGATTATCCAccaaaaataaatcataatGAAAAGGACAAATTTTTggaggaaaattttaaaattacgtgTTTTTTGTGTAATATTCCAATGGAAACTTTTTCCATTTTGCGTAAACATTTCGAAGAATGTCACACGGAGCTTGGTCATGTAAAGTGCTgcaataagaaattttatagaCGAAGTATTTTAGTCGATcatgtaaattttcatttaaatccaAACTACTTTAAATGTAAAGAGTGCGGTAAAGTGATGGCAGATAGACGTTGTCTGGAGTTGCATGTAGAAATTCACAAAAGTAATCACGAAAAAAATCACTGCTGTGACATATGCGGAAAAGGGTTTGAAAAATTAggggttttaaaaaaacataggTTGATACATTTATCAGAGGAGGAAAAACGTTTTTCTTGTTCAGAATGTGGCAAAAATTTTGGTTCAAAATATATGCTCTCCAGCCATTATCGATCAGTTCACCTTAAAAAGTATGCTAAAATCTGTGATATTTGCGGAAAATCAATACGATCTAAAGATGTATTTGAGCGTCATATGCTACAACATGAGGGTAAAACTGCTCCCACAATAAGTTGTGATATATGTGGTCTAGTTTTAACAGATAACAGAGCCATAAAACGCCACAAGGAAATAATACATCCTGTAGGTGGACAACATGAATATACTTGTTTAATATGTTCAAAAGTATCGCCGAATATGAGGGCCCACAAACGGCATGTGCAGTATAAACATGAAATGGGCTATGACTATAAGTGCACAATATGTGAAAAGGCTTTTAAAAAAGCACAAACTTTAAAGgaaCATATGGCTTCACATACTGGTACAATTTTATACACCTGTCCCTGGTGTCCCAAAACTTTTAATTCCAATGCCAACATGCATAATCATCGTAAGAAAGTACATCCTAAGGAATGGGAGGAAGCCTCACGAAAACGGTATTCTGGTAATCTACCTCCTAATTTTAAACCTCCAACAATTacagtttaa
- Protein Sequence
- MEGCILCLELKQERINNCIIINSTQWHELNVKNILEKHLWTMAHLGDTSWLCTTCWRELFEFHKFYKRIEEAHIDFGLIAHNILNVEINVYNKDECQSNEVAECSINELEESTPDKLHESPVNELKDFLKEYDNNLPIDIIADEQKPFIKHELIEEPLSKENPLEEKRKRGRPRKDNLIGTIKSKSTRKTKKYKKKLFNDVSSDHEVSKTIKKRYRKKINKIFNNDIETNVNDMISSEIKHEINLLSLSEDPKNLFDNDTDSNIDTDGEILERDDIKSKSSLDYPPKINHNEKDKFLEENFKITCFLCNIPMETFSILRKHFEECHTELGHVKCCNKKFYRRSILVDHVNFHLNPNYFKCKECGKVMADRRCLELHVEIHKSNHEKNHCCDICGKGFEKLGVLKKHRLIHLSEEEKRFSCSECGKNFGSKYMLSSHYRSVHLKKYAKICDICGKSIRSKDVFERHMLQHEGKTAPTISCDICGLVLTDNRAIKRHKEIIHPVGGQHEYTCLICSKVSPNMRAHKRHVQYKHEMGYDYKCTICEKAFKKAQTLKEHMASHTGTILYTCPWCPKTFNSNANMHNHRKKVHPKEWEEASRKRYSGNLPPNFKPPTITV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01237097;
- 90% Identity
- iTF_01236066; iTF_01237097;
- 80% Identity
- -