Plab039747.1
Basic Information
- Insect
- Pollenia labialis
- Gene Symbol
- -
- Assembly
- GCA_949318255.1
- Location
- OX439143.1:35884799-35886946[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.2 1.6e+02 4.5 0.2 3 20 279 296 277 300 0.88 2 11 0.00016 0.022 16.6 0.4 1 23 332 355 332 355 0.97 3 11 5.4e-05 0.0074 18.2 3.2 1 23 364 386 364 386 0.96 4 11 0.00013 0.018 17.0 0.1 1 23 394 417 394 417 0.95 5 11 0.00055 0.076 15.0 0.2 3 23 425 445 424 445 0.97 6 11 0.07 9.7 8.4 0.2 3 23 455 476 453 476 0.94 7 11 0.0014 0.2 13.7 4.1 1 23 484 506 484 506 0.97 8 11 0.018 2.5 10.2 0.4 3 23 516 537 514 537 0.94 9 11 0.00032 0.044 15.7 0.9 1 23 545 568 545 568 0.96 10 11 0.00019 0.026 16.4 0.3 2 23 575 597 575 597 0.95 11 11 4e-05 0.0056 18.5 1.7 1 23 603 626 603 626 0.98
Sequence Information
- Coding Sequence
- ATGGAATCTTGTGTATTGTGtcttgaaataaataaagacATTTTGAGTTGCATAAAAACGAACTCAGCAAGATGGGAAGAGTTGGACATAGCAAACACgatagaaaaacatttttggccaatgAACACAATACAACCCAATTCCTGGATATGTTTATCATGCTGGCGTGAGGTAGACGATTTTCACAAATTCTATTTGCGCATTAATGACGCTCACAAGGATTGCGGCAAAATAAAACTTGAAGATGAAGAGCCGGCAGCAGCAATATTTAAAGAGGAATTGCTTTCGGATAAGGATAAcatgacattttgttttatggAACCAGAAATACTTATTGATCAAACTCAACCACAAGATTTGGCAGAACCAGAAATACTGATTGATCAGTCATCCTCTCCTGATTTAAGGGCGAATAAGGAAACTCATATATCAGAGCCTTTAGATGAAAGAGATTTAGATGATATCCCTTTAAAGGAAGTCGGCAAACGTTTAAGATTACAAAATGATATGGCAAGAAAAGATCCTTtagaaaaatcgaaaaaatccaTTGCCAATAAAtctaagaaaagaaaatattgtaaagCAATAGCAAGTGCAAAAGAAATTAAGATGGAAGTTTCAAAGGTGAAAGATGAACCTGtggaattaaattataataacgaTTCAGATGGTATTACTGATAATGACAATGATGTAACTGATGCCAACTATCAGCCAGATAAAAATTCCTCCTTAGAAACTGTGGAAAGTAAAAGGCGCAAGGCTTATAGTAAACATCGCACTAATCGCAAAGCAAACGATCAATTTATAGCGGAACACTTTGAACAAATGTTTTGCGATCTTTGCCAAGTGACATTTGATGACTTTCCTGCCATGCAAAAACACTTTGTCGAGAATCACCAACAACGTGGCTATGTTGTTTGctgtaaacgaaaatttttcgaTCGCACACGTTTGGTGGACCATCTCCACTGCCATTTGAATCCCGATCATTTCAAATGCAACGAATGTGGAAAAGCCATGTCCGACCGCAATAATTTTGACAGTCATATGATCCGTGTGCATAGAACGAATGAGGTTGTAAAACAACATTGTTGTGATGTATGTGGCAAGTCCTTTACGGAAGCCTATATGTTAAGAATTCATAAATTAACACATTTGCCTGAAGAGGAGAAAAAGTTTCCTTGTAGCGATTGTGGTAAAAAttaCGGCAGTCCATACGTACTTAATCGACACCGGCAAGCCGTACACCTTAAACGATTTGTCAAAATCTGCTACATATGCGGCAAAGCCATAAATTCGAGTGCggaatttaaattacacatgaatAAGCACGAAGGTATACCGTTGCCGGTTGTCAATTGTGATGTCTGTGGTTTACGTTTGACGAGTGAACGAGGTCTTAAACTTCATAAAGAATCACAACATCCGGTTGGTGGAAAACAAGAACATCACTGTACCATTTGTTCTAAAATATCACCAACTCTAAAGGCTCTAAAAAAACACATGAATAAGCACGAAGATATACCGTTGCCCGTCGTCAATTGTGATGTCTGTGGTTTACGTTTGACGAGTAAAAGAGGTCTTAAACTTCATAAAGAATCGCAACATCCGGTGGGTGGAAAACAAGAACATCACTGTCCCATCTGTCCTAAAATATCACCCACTCTAAAGGCTCTTCGGAAACATATCGATACAATGCATAAAAAGGGTTACGATCGCAAGTGCAGCTTTTGTGAAAAAGCTTTTAAGAGACCGGAAGGTTTAAGGGAGCATGTGGCTTCACAACATACAGGCACGGCATTATACACCTGCCCTTGGTGCCCCCAAACTTTCAATTCTAATGGCAATATGCATTCCCATCGCAAAAAGATTCATCCTAAAGAATGGTTGGAATCAAAACTACAAAAGTATTCTGGAAATATACCaccagaaatttaa
- Protein Sequence
- MESCVLCLEINKDILSCIKTNSARWEELDIANTIEKHFWPMNTIQPNSWICLSCWREVDDFHKFYLRINDAHKDCGKIKLEDEEPAAAIFKEELLSDKDNMTFCFMEPEILIDQTQPQDLAEPEILIDQSSSPDLRANKETHISEPLDERDLDDIPLKEVGKRLRLQNDMARKDPLEKSKKSIANKSKKRKYCKAIASAKEIKMEVSKVKDEPVELNYNNDSDGITDNDNDVTDANYQPDKNSSLETVESKRRKAYSKHRTNRKANDQFIAEHFEQMFCDLCQVTFDDFPAMQKHFVENHQQRGYVVCCKRKFFDRTRLVDHLHCHLNPDHFKCNECGKAMSDRNNFDSHMIRVHRTNEVVKQHCCDVCGKSFTEAYMLRIHKLTHLPEEEKKFPCSDCGKNYGSPYVLNRHRQAVHLKRFVKICYICGKAINSSAEFKLHMNKHEGIPLPVVNCDVCGLRLTSERGLKLHKESQHPVGGKQEHHCTICSKISPTLKALKKHMNKHEDIPLPVVNCDVCGLRLTSKRGLKLHKESQHPVGGKQEHHCPICPKISPTLKALRKHIDTMHKKGYDRKCSFCEKAFKRPEGLREHVASQHTGTALYTCPWCPQTFNSNGNMHSHRKKIHPKEWLESKLQKYSGNIPPEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01237038;
- 90% Identity
- iTF_01237038;
- 80% Identity
- -