Plab037760.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pollenia labialis
Gene Symbol
-
Assembly
GCA_949318255.1
Location
OX439142.1:160155334-160164775[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.83 1.2e+02 5.0 3.9 1 23 34 57 34 57 0.93
2 16 0.0016 0.22 13.5 1.7 2 23 97 118 96 118 0.97
3 16 0.0066 0.92 11.6 2.3 1 23 195 218 195 218 0.96
4 16 0.041 5.6 9.1 2.6 2 23 226 247 225 247 0.97
5 16 0.011 1.5 10.9 0.7 2 20 311 329 310 332 0.94
6 16 0.00033 0.045 15.7 2.5 1 23 411 434 411 434 0.97
7 16 0.0009 0.12 14.3 1.6 1 22 441 462 441 462 0.95
8 16 6.5e-06 0.0009 21.0 0.3 1 23 573 596 573 596 0.98
9 16 1.5e-05 0.0021 19.9 0.9 1 23 602 624 602 624 0.99
10 16 0.0011 0.16 14.0 5.7 1 21 630 650 630 652 0.96
11 16 0.64 89 5.3 5.2 1 19 658 676 658 679 0.95
12 16 0.004 0.55 12.3 0.2 3 23 709 729 708 729 0.99
13 16 0.00069 0.095 14.7 5.5 1 23 735 757 735 757 0.99
14 16 4.5e-06 0.00063 21.5 4.5 1 23 763 785 763 785 0.99
15 16 3e-05 0.0042 18.9 3.8 1 23 791 813 791 813 0.99
16 16 0.039 5.3 9.2 1.3 1 22 819 840 819 843 0.89

Sequence Information

Coding Sequence
atgtatgtacatatgtatagccAACCTGACCAACGAAAATTACCACAGCAACCAGCTACATTATCTTACGATGACAAAATcgaaaaagttggcaacagttTCCTTTGCGTCATATGCAAAAGAACATTTACTCTACGACGATATTGTCgtcaacatattaaaaatatacataaatgtttaGAGCATAATATAAGCAATGCACATTCGGACGATGCGGTGGATCCAATCGTAAGACGTTGGTTGTTTGGTGATCATATATACAGTAAGCCGACTGCTTGGCGTCTTGTGCAATGTAAGTTGTGtaccacaaattttaaaacaactaaagaaCTTCGTATGCATTTGGAAAGTCATAGTGATGTAGACACTCTTCATAAGTTAAAACTAGCCGATAACATTGTTCAGTACATGTTTCCAAATATGTACAATTTAAACTCTATTAAGGAAAGCATATGCAAAGACATTCGTAAAAAGCAGTGGTTTAAATACTACACAGTGTTAAACGAATATTCCTATGAAATGTCTATTAGTGACACGGAAGTAGAAGATTTAGAAGAAGAAATTGCAGAGCGTGACAACAGATACAAGTGCGCTTTCTGTGCCAAAGGTTTTTCTTATAAACACCAGGTTTTTTCCCATTTAAGAGACGCTCATAGCAAGGACGAAATTCCATTAAAATGTAGTCAATGCAAATTGGAATTTATCTCAATCAAAATGTACAAACATCACTTAGAAACCCACTgccaaaataaacacaaaaatttgcTTTGTGCGCATTGTCCAGGAAAGTTTATTTGgccagaaaacataaaaaatcacaattgtggAACCAACAAATTAGCGACTTCGGCGACGTCTACAGAAGATAAAcatcaaaatagttttaaaaatgataTTGATGGTATATCCTACTCAGCTAAACCTATAATACGTTGTGGTCTTTGTGCGCAATCCTTTAAAAATATTCGACACCTGCGTCAACACATGCCTTTACATGCAGACGGCAAAACTGGAATTGACTTTAAAGACTGTAATTATGTCAGGCAGTTTGAAAACTTAGATTCAATAGATTTTGCGAAGCTGCAGAAGCAAATTCAAGATGCCTATACTAAGTCTCAAATAAGTCGTTATTATCAAGCTGTCGATAAACTCGGCAACGAAATGGATATTTCAGATTCTGATACGGATAGTTCCACGGAAGACACTAACGAagataataaagaaaaagtttacgCATGTGATCTTTGTaaggaaaagtttaaaaaacgaaaatatttgttaaaccaCCAACAGACACAGCACCCAGGTACCCTGATGCCCTTTAGTTGCAAGGAGTGCCAGAAACAATTTGTGAGTATTCATTTGTTGCAGCAACATCTAAAGAGGGAGTGCTTAAATGAATACCGACGACTAGCACCAACATGTGAATTTTGTAACGCCTGTTTAATATGGCCTAGTAATATGTTAAAACATAAAGCGATTCAgCATCCCTTAATGATACAACCTTTAAGCAGCATGCCAACGACAACTGAATCTGTGGAGACTGCAACCGTAGAAAACGCAAGTTGGTTCCACCGAGAAGACATATCGGAAAAAAACTTGATTGATATTTCTAACAATGAATGCATAGAGTCGAAAAATTTACATAACAGCGATCAAAAATCAACTATggaaaataacatttcaaaactATTCACACCAACAAcggaaaataaatttcaatgtccATCATGTGGTGTATCCTTTTCTAACAATCCCAAGCTCACAGTACACATAAAATCACGTCACACTACTAAAAACCCTTTTAAGTGCAATCTTTGCGAAATGACATTTATATCCTTATCCGACTTGCAATCTCACCGACTTACACACGCTGGTGATCGTGTTTACCAGTGCTCGATTTgccaaaagaaatataaaaaatcagaaTATTTAAGACAACATTTGCGTTGTCATACAGGCGAAAAACCCTATAAGTGcaaaatttgcaacaaatattttatgtgcAGCGCATATCTGAGAAGACATTGTCAGTTAATGGGACATACCGCATTGTGGTCAGAGGCAGAGCTAGAACCTAAAGTCCCTGAGGAGCACATACCAAAAGCAAAACATAAATCACTATGCCCCTTTTGTGGAATTTACTTGTCTGGCAATACAAGTCTAACATTGCACATAAGAACACACACAGGTGAGAAACCGTTTAAATGTGATTTTTGCGAAATGGCATTTGTACGTAGGTGTCATTTAAAAGATCACCGCCGTATTCATACTGACGAACGTCCTTTCAAATGTCCGCATTGTGAGAAATCATTTGCGAGACAATGCCGATTAAAAGTTCACATCCGAGTACACACCGGAGAACGTCCTTACCAGTgcacattttgtaaaaagtcgTTTAATAAATCAGACTATTTAAGACTACATGAACGTAGTCATACAGGCGAGAAACCCTTCAAATGTGAGGTTTGTGGTATGGCTTTTACATGTGGCGCATATTTGAAAAAACACCGCATCTCAAAGGGACATCCGGTGGAAAAAATTGATTCGAAAATACCTACGCTCTag
Protein Sequence
MYVHMYSQPDQRKLPQQPATLSYDDKIEKVGNSFLCVICKRTFTLRRYCRQHIKNIHKCLEHNISNAHSDDAVDPIVRRWLFGDHIYSKPTAWRLVQCKLCTTNFKTTKELRMHLESHSDVDTLHKLKLADNIVQYMFPNMYNLNSIKESICKDIRKKQWFKYYTVLNEYSYEMSISDTEVEDLEEEIAERDNRYKCAFCAKGFSYKHQVFSHLRDAHSKDEIPLKCSQCKLEFISIKMYKHHLETHCQNKHKNLLCAHCPGKFIWPENIKNHNCGTNKLATSATSTEDKHQNSFKNDIDGISYSAKPIIRCGLCAQSFKNIRHLRQHMPLHADGKTGIDFKDCNYVRQFENLDSIDFAKLQKQIQDAYTKSQISRYYQAVDKLGNEMDISDSDTDSSTEDTNEDNKEKVYACDLCKEKFKKRKYLLNHQQTQHPGTLMPFSCKECQKQFVSIHLLQQHLKRECLNEYRRLAPTCEFCNACLIWPSNMLKHKAIQHPLMIQPLSSMPTTTESVETATVENASWFHREDISEKNLIDISNNECIESKNLHNSDQKSTMENNISKLFTPTTENKFQCPSCGVSFSNNPKLTVHIKSRHTTKNPFKCNLCEMTFISLSDLQSHRLTHAGDRVYQCSICQKKYKKSEYLRQHLRCHTGEKPYKCKICNKYFMCSAYLRRHCQLMGHTALWSEAELEPKVPEEHIPKAKHKSLCPFCGIYLSGNTSLTLHIRTHTGEKPFKCDFCEMAFVRRCHLKDHRRIHTDERPFKCPHCEKSFARQCRLKVHIRVHTGERPYQCTFCKKSFNKSDYLRLHERSHTGEKPFKCEVCGMAFTCGAYLKKHRISKGHPVEKIDSKIPTL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-