Plab012748.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pollenia labialis
Gene Symbol
-
Assembly
GCA_949318255.1
Location
OX439140.1:22394514-22400741[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.19 27 7.0 1.1 1 23 278 301 278 301 0.93
2 13 0.013 1.8 10.7 1.2 2 23 382 404 381 404 0.95
3 13 4.5e-05 0.0063 18.4 3.5 2 23 738 759 737 759 0.97
4 13 0.0002 0.027 16.4 2.0 1 23 765 787 765 787 0.97
5 13 0.015 2 10.5 3.7 1 23 795 817 795 817 0.98
6 13 6.7e-05 0.0092 17.9 0.2 1 23 823 846 823 846 0.97
7 13 0.03 4.1 9.5 2.4 1 23 953 975 953 975 0.97
8 13 0.028 3.8 9.6 2.4 3 23 983 1003 981 1003 0.97
9 13 0.0034 0.47 12.5 6.8 1 23 1009 1031 1009 1031 0.98
10 13 1.7e-07 2.3e-05 26.0 0.2 1 23 1037 1059 1037 1059 0.99
11 13 0.0003 0.042 15.8 4.8 1 23 1065 1087 1065 1087 0.98
12 13 8.4e-05 0.012 17.5 4.1 1 23 1095 1117 1095 1117 0.99
13 13 5.4e-05 0.0075 18.1 1.0 1 23 1123 1146 1123 1146 0.97

Sequence Information

Coding Sequence
ATGATCAACGCTTTGCTGGAGCATGTTCCCATCAAAATGGAAGTTAAAGATAATGAAGAAGAGGCTAAACGAAATGATTTAGCAAAAGATGATATGGCAGTGGAAATGGCCATAGATGATGATAAAATTGATGAAACTGATGAGGAGTTAGAGGAGGATGAGGAAGATGATGAAGAAGAAGAGTCTGATACGGAAAGTGATGCCTTGGAAATTGAACAAGCGGCCGTTATGTTAATGAGCAGCGATGAGGAGGCTGAATTAGAAGCACAAAGAATACGTTTTCCTGATATTTCAAACACAAAGAAGTCTTCAAAAGATTCTCTAAAATCGTCGCGAAGCTCTTCTAGGAATAGTCAATCTAGTAATTCATCCTCCAAGCCTCAGTTTACTAAGGAAAGTTCTCCAATCAAAGAATCTTTTGAGGAATcgcacaaaaaacaaagaatttcaCCTCGCCTTAAGAATTCGGAGAACAATAAAACATTGGAGAGCTTAAATAtagagaacaacaacaacaacagcaataaattATCAACTCAAATACTTGCAAAAGCGAAAACAGAGCAACAgaaattagaaaataataaaactttggaaataaataaaaataaacaagacgAAACAAGCAAAAGTTTGGATAACAATAAAAACTCCGAAAATAATCGTAATAAAGACAATTTGCCTAAATCACCAGCCAATCAAGCTGGATTAAAAAGTCGCCGTGGCAGTGATAACTCTACCTGCAGTGTGGCATCAACTGTAGCCTCCGACTCTGCAGAAACAGAATCATGTGGAAATATTTATGTCtttaatttgcaacaaaaactcatatttaattgtgaattttgtgatataaaatATGGTGACTTGGAAAATTTCGGACGTCATCTCCACGAAACTCATAAACTTTTCCATCTTGATGAAGATCATGAAAAAGAAAATGCACCTCGCAATTTATCTAAAACtattaatatatcaaaaaataaaacttccaAGCCCTCCGCCACtaatgttaaaaaagaaccTTTATCATGTTTTGATACTTTGGCTGAACCACCTGTTGCTTTGCCGCCTTCTGTTTTGGCCGAACCTCTAGACTCGTGTGGCAATGTTTTTATGCTGAATCATcgtaaattgtttttagtttgtGGCTATTGTGAGTGTAAATATGCCAATTtggatttgtttgaaaaacactTAAGACAACAACATCGCATATTTGAGGGTTGTCGCAATGAGGTGAATGTTGTTCCCAAGGTGGAGGTTAAGGAAGAGGTATTCATTATTACAGAAATGGTTGATAAGACCGATAAAATACCTCCTCAAGTTATGGTCGCTATACCAGCTGAAATTCCTTTAGATATAAGTATTAACGAGGAAAATTCAACCGAAACACCAGTCAATGCTGAAGACATAATGGAAACTGTAGAGGAAATTAGTAATTTAGAACCTACTGAAACCGCTTCAGTTTTGGACTCTAACATTTTAGAAACTTCTTTAGTTAAAGAACCCGAAATGCCTATTATAATCAGTAAAGTTTCAGATGCAAAAGGAGTTGAAATACTATCAGAAATTGAGGTAACTGAAAAAACATCTATTAAGAAAACAAGAAGCAAAAGACGTTCTTCACCGGAAAAACCTTTAGAGTCGCCAAACAAACGCCCTAAAAGGATAACAAGAAATAATACAAAAGTCGAAGAGAAGCCTCCTCTCGCTTCAATAGAAGAAAAACCCTCTGAAAAAACACCGGAATCTGCACAAATTATAAAAGCAGTAGCAATATCAGATACTTTAAAATCTGCCAAAACTGAAGAGATTACAGTCGATTTTGTAATACCTACAGAATCACAGAAAGACCCACTTCTAGAAGTGTTAGAAACTAAAGAAACCAAGGATACAGCAAAACCCACAGATTCCGAAATAACAACACCCCTGAAAACGTATGAAACCAGGGAAACTAGAAAATCAGCACagattaaaaaactaattaatacCGAAGAAACTAAAGAAACCAAGCAGcaaccaacaaaaacaaaagtaaataaatctaaaattaaaacaagaaaagaCTCAAAAATTGTAGAAACACCGAGAACGAAATCAACTAgaaattcaacaaaatcttcTGAGACCAACCATTTCGAAACTGAGAAGTCAGTAGTCGTTAGAAAACCTGAAATAAAAACCATAACTgtgaaaaaatctaaattaaaatgCTCCACATGCTCTAAACAATTTAAACGTTCTGACACTTTAAAGACACATGAACGTACTCATGCCGCTGAAAGGGCCTTTGTGTGTGATGTTTGTAACAAAAGTTTTAAGGCTCAGACAAATCTCTACATGCACAAACGGTTTCATCTGGGAGAtgcttataaaaattataaatgtcaattttgtgaaaagaaatTCTTCCGCAACACTGATCGCAAAGTGCACGAGTTAACGCACACCGGCGAAAAAAGATTTGAATGTGGAATTTGTGATCGGGGTTACGCTTCACAGTCGAATATAAAGAAACACATTGAAAAGAATCATGGTAAAGATGCAGAGGccaatattaagaaaattcctaaagaaaaagtaaaagaaactgtacagaaaacaaaattaaacgaaGATGACCATAATATGGATGATCTCTCTACTGATCCAGTTGATGATATAATTAAGCAATTGCAAAATGAAATGCAACCAAGACACGATCCAGAATCAAATGCAGTAACCTTTACCATAAACACTCTGGCCTGTAGtgaagatttaaataaaacattggaAATTACAAATCAACAGAATGATGAAATTGATACAACGGAAAAAGATGTTAAACCTACACTTTTGCAAATCGTTAAACGTTTTATGTGCGATTTGTGTAATCGCACTTTCGAAAAGCACATACGTTTGGTAGAACACCGACGTTTGCATACTGGTGAAAAACCGTTTGGTTGTGATATATGCGGCAAACATTTTCGCATACGCATGCGCCTAAACGAACACAAACAACGGCATTCCAGtgaaaagaaattcaaatgTGAAATTTGTCAATTGGCTTGTTGCACCAAACAAGACTTGAATTTGCACATGCGTCATCATACCAATGATCGTCGCTACCAATGCAACATGTGTCCCAAAGCATTTGTCCGTAGTTCTGATCTGAAAATTCACGTACGTATACATACCGGTGAGAAGCCTTATGTATGTGATATATGTCACAAATGTTTTCGGGCTAATCAAAATCTAAGTGTGCATAAAAAGTCTCACATGGGAGAGGCTAGTAAAACCTATAAATGTGAACATTGTGACAAGAAATTTATGCGCAATATAGATCGTAAAGTGCATATGAGATCTCATACAGGCGAAAAGCCGTTTAAGTGCGAGATTTGTAATAAAGGCTATTCGTCGAAATTTAATGTTCGTACTCATATTGAACGGGATCATGTATCGGCAAATGGTGTAGGTCCACCACCCAGGGGTAAAAAGAAACCAGGACCAAAACCTAAGGCTCTAAGGGCAGAATTGGAGAAGCAAAAGCAGCTGATACAGGAATTACAACATCAATTATTGCAGCAAATAAAAACCGATGAAAAGGTTATCTACGCAGAAGATGAATTACTGACAGAGCACAACACTTTGGAACCAACCCCTTCACTCCTCAGCAGCTCTTCCAAAACAGATCCCATACAAAGTGCTTACGAATTGCTAGATAAATTAAAATCATCTGCAACAACTACCTCTAAACCACTAACGATAATACCTTCGCCACCACCTTTGGCAGAGCCAAACTCAGATCCTTTTTCAAAAGCCAAAAAAGACTCTTCAACTGTACTACCTCTAAGTATTACACAAAAACTGGAACAACATTCACCCTTGCCCTCTTCTACCTCATCGTCCACATCTTGTCTAACAACACCATCACCACCCAAGACCACAGCCACAAAGGTAGTGTCTCAAAAAACCTCATTAGGTATACAACAAGTATCGGTGACAGTGTCAATGCAGGTGGAAAATGTACCGGCTGAGCCAACCACATCCGAAAAAGAGAATGCTGGAATTTTGACGAGCAGTTCTAGCAGTACGACAAGTGTTAAGAAAGAAAGGAAAATTACAAGTTATTTTACCGTAGTTGGGCAGAAGGGtgaggtttaa
Protein Sequence
MINALLEHVPIKMEVKDNEEEAKRNDLAKDDMAVEMAIDDDKIDETDEELEEDEEDDEEEESDTESDALEIEQAAVMLMSSDEEAELEAQRIRFPDISNTKKSSKDSLKSSRSSSRNSQSSNSSSKPQFTKESSPIKESFEESHKKQRISPRLKNSENNKTLESLNIENNNNNSNKLSTQILAKAKTEQQKLENNKTLEINKNKQDETSKSLDNNKNSENNRNKDNLPKSPANQAGLKSRRGSDNSTCSVASTVASDSAETESCGNIYVFNLQQKLIFNCEFCDIKYGDLENFGRHLHETHKLFHLDEDHEKENAPRNLSKTINISKNKTSKPSATNVKKEPLSCFDTLAEPPVALPPSVLAEPLDSCGNVFMLNHRKLFLVCGYCECKYANLDLFEKHLRQQHRIFEGCRNEVNVVPKVEVKEEVFIITEMVDKTDKIPPQVMVAIPAEIPLDISINEENSTETPVNAEDIMETVEEISNLEPTETASVLDSNILETSLVKEPEMPIIISKVSDAKGVEILSEIEVTEKTSIKKTRSKRRSSPEKPLESPNKRPKRITRNNTKVEEKPPLASIEEKPSEKTPESAQIIKAVAISDTLKSAKTEEITVDFVIPTESQKDPLLEVLETKETKDTAKPTDSEITTPLKTYETRETRKSAQIKKLINTEETKETKQQPTKTKVNKSKIKTRKDSKIVETPRTKSTRNSTKSSETNHFETEKSVVVRKPEIKTITVKKSKLKCSTCSKQFKRSDTLKTHERTHAAERAFVCDVCNKSFKAQTNLYMHKRFHLGDAYKNYKCQFCEKKFFRNTDRKVHELTHTGEKRFECGICDRGYASQSNIKKHIEKNHGKDAEANIKKIPKEKVKETVQKTKLNEDDHNMDDLSTDPVDDIIKQLQNEMQPRHDPESNAVTFTINTLACSEDLNKTLEITNQQNDEIDTTEKDVKPTLLQIVKRFMCDLCNRTFEKHIRLVEHRRLHTGEKPFGCDICGKHFRIRMRLNEHKQRHSSEKKFKCEICQLACCTKQDLNLHMRHHTNDRRYQCNMCPKAFVRSSDLKIHVRIHTGEKPYVCDICHKCFRANQNLSVHKKSHMGEASKTYKCEHCDKKFMRNIDRKVHMRSHTGEKPFKCEICNKGYSSKFNVRTHIERDHVSANGVGPPPRGKKKPGPKPKALRAELEKQKQLIQELQHQLLQQIKTDEKVIYAEDELLTEHNTLEPTPSLLSSSSKTDPIQSAYELLDKLKSSATTTSKPLTIIPSPPPLAEPNSDPFSKAKKDSSTVLPLSITQKLEQHSPLPSSTSSSTSCLTTPSPPKTTATKVVSQKTSLGIQQVSVTVSMQVENVPAEPTTSEKENAGILTSSSSSTTSVKKERKITSYFTVVGQKGEV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01235986;
90% Identity
iTF_01236998;
80% Identity
-