Plab037757.1
Basic Information
- Insect
- Pollenia labialis
- Gene Symbol
- -
- Assembly
- GCA_949318255.1
- Location
- OX439142.1:160116816-160119339[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.023 3.1 9.9 1.2 2 23 14 36 13 36 0.94 2 14 0.00011 0.015 17.2 0.3 2 23 46 68 45 68 0.97 3 14 0.0016 0.22 13.5 0.7 1 23 74 96 74 96 0.95 4 14 6.7e-05 0.0093 17.9 0.8 1 23 102 124 102 124 0.96 5 14 0.0041 0.57 12.2 0.2 3 23 132 152 131 152 0.98 6 14 0.00023 0.032 16.2 1.0 2 23 158 180 157 180 0.94 7 14 0.0035 0.49 12.4 1.4 1 23 186 208 186 208 0.99 8 14 0.0014 0.19 13.7 1.5 2 23 283 305 282 305 0.95 9 14 0.00064 0.088 14.8 0.1 2 23 315 337 314 337 0.97 10 14 0.0025 0.34 12.9 2.7 1 23 343 365 343 365 0.98 11 14 0.00026 0.036 16.0 1.8 1 23 371 393 371 393 0.98 12 14 0.0047 0.65 12.0 0.2 3 23 401 421 400 421 0.98 13 14 0.00035 0.049 15.6 0.9 2 23 427 449 426 449 0.94 14 14 0.0035 0.49 12.4 3.1 1 23 455 477 455 478 0.96
Sequence Information
- Coding Sequence
- ATGGTGAATACTGAAGATAATAACGAAAAAGAGCCGATTGTCTGCGGAAAATGTACTCAAATATTTTTCACTATTCACACGTATCAAAGACACCAACAGGCTGAACATTCTTCAGAATTAAATGAAGAGAGAAACAAATGCCCGATATGCTCAAAAGAATTTaggaataaattttatgtagttgaTCATATAAAAGTTGTACACGATAAGTTAAGGCCCTTTAAATGTTCCCATTGTCCAAAAAGTTTTGCTGCAGCAGCTTCCAAAAGAATTCATGAACTTTCACATACGGATGATTTTCCATATCAATGCGAATTCTGCGATAGAAGATTTCGGTTGCCCAGCAAATTGAAGATTCATTCAGAAATTCATACAACCAAACCCGAACTCCTATGCCCCATCTGTAAAAGAAGCCAAACGTCACAGGAAGAGTTAGAAGCTCATGTGAAAAATCACGATGATAATCGTTTGCAGTGTCCTTCATGCGGTCACCTTTTTAGAAAAAGATCTAATCTTAATGATCATTATAATGCAGTTCATTTAAAATTGCGTCCTTATAAATGTGATTTCTGTGAACTGGGTTTTGGTGACCGTAAAACACGGCGAGTACATCAAAGATCTCATAATAAGAAAGAACTATTGGTATCtgcaaTACCGATAACTGGAAAAAAGTCAACAAAACGAAATCACCGTACAACAGTGGCACAATCAGGAGAATGTAAAGAACGAATTCGCAATCCTAAAAAGCGTATAAGAAAACCTAAGCAACCAAAAAAAGTTGTCGAAAAATCGGTCACTATTGAAAAAAATGATATTGATGAAGTTGATGATGGAAAAGATCCGATTGTGTGCGACaaatgttcaaaaattttttttactatacaCACCTATCAAAGACACCTACGAGCAGAACATTCGTCAGGAACGAATCAGGCGAAGAACAAATGTCCGATATGCTCAAGAGAATTTGTTAGTAGTTGGTATGTTATGGATCACATTAAAGTTGTGCACGACAAAATTAAACCTTTCAAGTGTTCCCAGTGTCCAAAAACTTTCGCATTAAACCATTCCAAACGAGTTCATGAGCTCACACACACTGATGACTTTCCCTATGTTTGTGAATTTTGCGATAAAAGATTTCGTCTGgcctgtaaattaaaaattcatttagaaATACATACAACTAAACCAGAACTATTATGTCCCATCTGTAAAAGAAGTCAAAGGTCACAGGAAGAGCTAGAAGCCCATGTAAAAAATCACGATGATAATCGGTTGCAATGCCCTTCGTGTGGTCACTTATATAGAAGAAGTTCTCAACTTAAAGATCATTATAATGCAGTTCATTTGAAATTGCGTCCTTATAAATGCGAGTTTTGTGAATTAGGTTTTGGTGATCGGAAAACACGTCGTGTACATCAAAGAACTCATCACAAGCAAGAACTTTCTTTATCGTGA
- Protein Sequence
- MVNTEDNNEKEPIVCGKCTQIFFTIHTYQRHQQAEHSSELNEERNKCPICSKEFRNKFYVVDHIKVVHDKLRPFKCSHCPKSFAAAASKRIHELSHTDDFPYQCEFCDRRFRLPSKLKIHSEIHTTKPELLCPICKRSQTSQEELEAHVKNHDDNRLQCPSCGHLFRKRSNLNDHYNAVHLKLRPYKCDFCELGFGDRKTRRVHQRSHNKKELLVSAIPITGKKSTKRNHRTTVAQSGECKERIRNPKKRIRKPKQPKKVVEKSVTIEKNDIDEVDDGKDPIVCDKCSKIFFTIHTYQRHLRAEHSSGTNQAKNKCPICSREFVSSWYVMDHIKVVHDKIKPFKCSQCPKTFALNHSKRVHELTHTDDFPYVCEFCDKRFRLACKLKIHLEIHTTKPELLCPICKRSQRSQEELEAHVKNHDDNRLQCPSCGHLYRRSSQLKDHYNAVHLKLRPYKCEFCELGFGDRKTRRVHQRTHHKQELSLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01235980; iTF_01236997; iTF_01236991;
- 90% Identity
- iTF_01235980; iTF_01236991;
- 80% Identity
- -