Basic Information

Insect: Pollenia labialis
Gene Symbol: -
Assembly: GCA_949318255.1
Location: OX439140.1:91601451-91607962[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0074 1 11.4 2.2 1 23 84 106 84 106 0.98

2 11 1.1e-05 0.0016 20.3 2.4 1 23 112 134 112 134 0.98

3 11 4.6e-05 0.0064 18.4 0.2 1 23 140 163 140 163 0.96

4 11 0.075 10 8.3 7.5 1 21 169 189 169 191 0.95

5 11 4.9e-05 0.0068 18.3 2.1 1 23 197 219 197 219 0.99

6 11 5.2e-05 0.0072 18.2 3.7 1 23 225 247 225 247 0.98

7 11 0.00048 0.067 15.1 4.5 1 23 255 278 255 278 0.98

8 11 0.0014 0.2 13.7 0.4 2 23 285 306 284 306 0.97

9 11 0.00041 0.057 15.4 0.4 1 23 312 334 312 334 0.97

10 11 2.1e-07 2.9e-05 25.8 1.0 1 23 340 363 340 363 0.97

11 11 4.5e-07 6.2e-05 24.7 2.5 1 23 377 399 377 399 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0074	1	11.4	2.2	1	23	84	106	84	106	0.98
2	11	1.1e-05	0.0016	20.3	2.4	1	23	112	134	112	134	0.98
3	11	4.6e-05	0.0064	18.4	0.2	1	23	140	163	140	163	0.96
4	11	0.075	10	8.3	7.5	1	21	169	189	169	191	0.95
5	11	4.9e-05	0.0068	18.3	2.1	1	23	197	219	197	219	0.99
6	11	5.2e-05	0.0072	18.2	3.7	1	23	225	247	225	247	0.98
7	11	0.00048	0.067	15.1	4.5	1	23	255	278	255	278	0.98
8	11	0.0014	0.2	13.7	0.4	2	23	285	306	284	306	0.97
9	11	0.00041	0.057	15.4	0.4	1	23	312	334	312	334	0.97
10	11	2.1e-07	2.9e-05	25.8	1.0	1	23	340	363	340	363	0.97
11	11	4.5e-07	6.2e-05	24.7	2.5	1	23	377	399	377	399	0.98

Sequence Information

Coding Sequence: ATGGcacaagCAAGTTCTGCCATTGCTAAGAGAACTAAACTGGAAACTAGCACAATTGAAAAatccaaaactaaaaagaataATACAAATGAAACAATTACCTCGGAAATTGGTAATCAAGAAGAAGTGTATGAGTTCGATGAAAACGAACAAGATCCAGACGATCCCCAAGATGTAACCCAAGCTGATTATGAATCTAAAggcgtaattaaaaatgtaacaaagaCAGCAGCAAAAGAGGCCGCATCATATACATGTATGATATGCTCAtacgaaacaaacaaaaaatttttactttcgaGGCATTTAAAGTCACACTCCGATGATCGTCCACATAAATGTTCTGTGTGCGAAAGGGGTTTTAAGACAAAGGCCTCTCTCATAAATCATCGTAACACTCATTTAGGCTATAAGCCCTACGCATGCTCGAGTTGTGATATGGCCTTTACTACATCGGGAGAGTTGGTGCGACATGTGCGATATCGTCATACTCACATAAAACCACACAAGTGTACCGAATGCGATTATTGCAGTGTAGAAATGAGCAAATTACGACGTCATATGCGTTGTCATACCGGCGAAAGACCTTATCAATGTCCGCATTGTACTTATGCTTCTCCAGATACATTTAAATTGAAACGCCACATGCGCATACACACGGGCGAGAAGCCATACGAATGTGACATTTGTCATGCTCGGTTTACGCAGTCAAATTCTTTAAAACATCATCGTCTTATACATTCAGTCAATGATAAGCCTGTTTTTCAATGTCATCTTTGTCCCACCACTTGTGGACGAAAAACAGATTTACGTTTGCATATAAAGAAATTACATAATTCTGATCAACCAATACCATGTAAGCGCTGTGGCAAAGAACTGCCTGATCGTTATACATATAAGATGCATGTAAAGACGCATGAAGGCGAAAAATGTTACCGTTGTGAATACTGCCCATATGCTTCGATTTCCCAACGTCATCTTGAATCACATGTCGCAATACATTTGGATACCAAACCATTTGTTTGTGAAATGTGTCAAAAAAGCTTCAGGCAAAAGGCTCTTCTAGCTCGTCATATGAAAATGTATCATTCGGATAATTATACACCACCACCAACACGCAAAAAGGATCATAAGTGCCCACAttgtaataaaatgtttgcATTTAATGGAAATCTAATACGTCACATGGAAATTCATGATCCAACATCTAGACTTTTTGAAGagaaggaaattttaaaaatgggacGCATGAAACGAGTTCAACCTGATGGGACTCTTGTAATGGTATATGCAAAcaataatttgtcaaaaaattttgatggCAATTCTGAAGGGTCTTCTGAAGAAAATGAGATACAACAAGATGAGGACGAAGAACTACAAGAAGAAGACGAAGAATATGAAGTACCGGAAGAGTATAACGAGGATAATATACAATATGTTTATGAAGAATTAGAAGCTGATGAATATGAAGAACAGGATGGAGACGAGCAATACGACAATCAGCAGGAGGCATTCGATCAAAAGACATCAACTGTAAAAAAGGAGAAAATGCAAACAGAAGATATTGCTCAGTCAGTTAAGGCTGAAGACAGTGAAGATTCTGAGATAATGTCTTTAAAAGTACACGACGATCAAGGTTTTATGATTATAGAAGTTTTGCCTGACGACGACGATgataaaaaagaacaacaacagtCCCCAGCTGAAACCAAgcctaaaataattaataaaagggCTAATAAATCTACAGTGATACAAGCGCATAAAAAAACTCAACCACTTATTTCcgattattttggttttgaagTTGATGAAGACGAAGGCGACGAAGAAACTAAAGGAGCTATTAAATTATTGGAGATGATTGAACAGGAATAA
Protein Sequence: MAQASSAIAKRTKLETSTIEKSKTKKNNTNETITSEIGNQEEVYEFDENEQDPDDPQDVTQADYESKGVIKNVTKTAAKEAASYTCMICSYETNKKFLLSRHLKSHSDDRPHKCSVCERGFKTKASLINHRNTHLGYKPYACSSCDMAFTTSGELVRHVRYRHTHIKPHKCTECDYCSVEMSKLRRHMRCHTGERPYQCPHCTYASPDTFKLKRHMRIHTGEKPYECDICHARFTQSNSLKHHRLIHSVNDKPVFQCHLCPTTCGRKTDLRLHIKKLHNSDQPIPCKRCGKELPDRYTYKMHVKTHEGEKCYRCEYCPYASISQRHLESHVAIHLDTKPFVCEMCQKSFRQKALLARHMKMYHSDNYTPPPTRKKDHKCPHCNKMFAFNGNLIRHMEIHDPTSRLFEEKEILKMGRMKRVQPDGTLVMVYANNNLSKNFDGNSEGSSEENEIQQDEDEELQEEDEEYEVPEEYNEDNIQYVYEELEADEYEEQDGDEQYDNQQEAFDQKTSTVKKEKMQTEDIAQSVKAEDSEDSEIMSLKVHDDQGFMIIEVLPDDDDDKKEQQQSPAETKPKIINKRANKSTVIQAHKKTQPLISDYFGFEVDEDEGDEETKGAIKLLEMIEQE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01236996; iTF_01235978;
90% Identity: iTF_01235978; iTF_01236996;
80% Identity: -