Plab037724.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pollenia labialis
Gene Symbol
-
Assembly
GCA_949318255.1
Location
OX439142.1:160010532-160022238[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 0.037 5.1 9.2 0.3 2 20 217 235 216 238 0.93
2 21 0.0076 1.1 11.4 0.4 1 23 312 335 312 335 0.95
3 21 0.033 4.5 9.4 0.7 2 23 343 364 342 364 0.97
4 21 0.021 3 10.0 1.3 2 20 444 462 443 465 0.94
5 21 0.52 72 5.6 3.7 1 23 544 567 544 568 0.94
6 21 0.00071 0.099 14.6 1.9 1 21 574 594 574 595 0.95
7 21 2.3 3.1e+02 3.6 0.2 2 23 607 629 606 629 0.93
8 21 0.12 17 7.6 0.5 3 23 679 699 678 699 0.95
9 21 0.02 2.7 10.1 0.1 2 20 726 744 725 746 0.92
10 21 1.3e-05 0.0019 20.0 1.9 1 23 802 825 802 825 0.98
11 21 0.5 69 5.7 0.8 3 23 864 885 862 885 0.96
12 21 0.0014 0.19 13.7 0.2 3 23 949 968 947 968 0.96
13 21 6.1e-05 0.0084 18.0 0.5 1 23 974 996 974 996 0.99
14 21 3e-06 0.00041 22.1 1.7 1 23 1002 1024 1002 1024 0.98
15 21 5.4e-06 0.00075 21.3 2.8 1 23 1030 1052 1030 1052 0.98
16 21 0.01 1.4 11.0 1.6 1 21 1058 1078 1058 1082 0.92
17 21 0.1 14 7.9 0.1 3 23 1109 1129 1108 1129 0.97
18 21 2.6e-06 0.00036 22.3 1.4 1 23 1135 1157 1135 1157 0.99
19 21 1.5e-06 0.00021 23.1 3.2 1 23 1163 1185 1163 1185 0.99
20 21 1.1e-06 0.00016 23.4 2.9 1 23 1191 1213 1191 1213 0.99
21 21 0.073 10 8.3 1.5 1 21 1219 1239 1219 1243 0.90

Sequence Information

Coding Sequence
ATGAGCAAAAGCAATGAAAgtggattttttttcaatgaagtTGAGTATAAATGTCGAACTTGTTTTGATCCAGGACGCACAGTATATTTGCTTGCAGATGAATGCAAAAACAAGAAGACCTGGCGTGATTTACTAAATGAAGTTGTTCAATTGAAAACAAGCGAAGACGAGATGCTCCCAAAGACCCTTTGTTGTAAATGTTTGGATAAACTTATAAGTTACTATGATTTTATACTTCAGATTCAGAATGTAAATAGGAAATATTCTCAAATACTGGCAAATGTTAATGATCAACaacagaataaaattttaagtgaaGTTGACAATTTCACCGATTGCTTGGCAGAATCTGCTATCGCACTGCCGTTGGGACAACATGTGACGCAAATTAAATTTGAGGATGAGCTTGTTGTGCCATATGATGTTTTAAATGACAGCAATACAATACTAGGAGTTAGTGAAGAAAACTCACAAAATGAAGATGTTAATGACCCTTTTAAAGAAACTTGCAATGAAGAAATCAAATTATCTTTAGAAGGTTTCCAGGAACAAAAGagATTTTTAGATGAAGACcctaatcaaattttaaaagaagagTACTCCTATAGCAAAGAAGAATGCAGCAAGCCTGCAGCATGGCGCCTTGTTAAATGTATGTTGTGCGACGCAGAATTTTCCACGACAAAAGAACTGCGACAGCATTTGCCAAATCACAGAGATCGAAACACACTTCATAACTTGAAACTAAGCGATAGCATTGTCCAGCATTGGTTTCCAAATATGATTGATATAAACCATATCAAGGAAGTAATATGTAAAGATATTTGTGGAAATGATTGTTTCAAATACTACACCGTATTGAACGAATATTCATATGAAATGTCCGTTAGTGATACGGAAGTAGAAGACTTGGAAGAAGAAGCTGCGAGCAAATACATATGTGAATTGTGTGCTAaagaattttcatataaatatgaaattttttcccATATAAAAGATGACCATGCCGAGAATGAAATTCCTCTAAGCTGTAGTCGATGCGAATTAGTGTTCGtatcaattaaaatgtatgaacaaCATAGAAAAACTCACTGCCGAAATGagcataaaattttacattgtaTGCATTGCCCAGGAAAGTTTGTTTGGCccgaaaatatgcaaaatcaCAATTGTCCCACGAAAATGCCAACGAGTTTATCAGACGTTACCGAAAATCATCGAAAATATGACACAAGTTTTCGTGAAATTGAGGATAACACTAAACATCAGGAGAATGAACTTCATACTGATAATGATAGCCGAACTGTTTTATCAAAAAGTGTAATACGGTGTGGTCTATGTGAGTTATCCTTTAAAAATTTACGATGTTTACGTCAGCACATGCCTTTGCATACCGACGGCCAAACCGGTATTGACTTTAAAAGCtgtatttatgtaaaacaatttgaaCGGTCAGAATCAATTGATTACCCAATCCTGCAACAACAGATCAAAAATGCCTATATTAAACGTCAAATTAGTTGTTTTTACCAAGCCATCGACAAGTTCGGCAATGAGATTGATATTTCAGATTCAGATTCTGATAGTAATATAGAGGATAATAACAGTGAAAATGTTAAGAAAGCTTATGCATGCGATGTTTGCAAAGATATGTTTAAAGAACGAAAACTACTGCTAAAACATCAACACGAACGTCACCATACCGAGAAGTTGCCCTTTACTTGCAAGGACTGCCAAAAGCAGTTTGTAAGTATACATTTGTTGCAACAACATTTAAAGAAAGAATGCTGGAACGAACACCGACGAATAGCACAACCATGTGATTTTTGTAATATCCGTTTTATATGGCCAAATAATATGTTcgtacataaacaaattcagCATTTTATGACAAAACAACCAGTCATTTCCACGATGAACAGCATGGATGTCACTCGGTCAATAAATGAAAACTTAGCAACATCAAAAACTTCTATTCCAACCACTTCAAAACTATTGCAACAAACTTCTGCTGATGTTCAACTTCGTTATTGTTTTCTATGCCCGAAAGCATTCTTTGCCATTGATCACCTCAATGAACATTTGGGCCGGCATCGTTTAACTTCATCTGATATAAAGATCGTTGAAACTATAATACATTCTACGTGGTGGCCAAAtggtaaaaaagttattaaatgcaaaatatgtgGCATAATATTTGAAACCATGACCAAGTTAAAAGAtcatttttcatcaaaaaacacaCAAACGGTTTGTTCTAACCAACCACATTCATTGGCAAGTTACTCTATTACTAATCAAAAAGGATTTGAGTTGCATTTAGAATTGGATTCTGAAACAGAATCGGAAGATAACGTGGAAGCTGAAGGTAACGAGAGTAATACGCAGCCTCTATACCCGTATAAATGTGGCATTTGCAGCAGATCGTTTAAGCGAAAATATCAAATAGCTCAACATCAAAGATCTATGCACAATTATGAACTGTTGGAACATAAATGCGAAAACTGTATTTTTAGAACAGTGTCAGAGAAAATTTTGGACTATCATAGAACAACACAGTGTTTGAATGCTGATAAAGTGTACGGATGTGATCAGTGTAAATTTAAGTTCATGTGGAAAGAAAACCTGGAAAACCATACTGCAACAtttcataatttaaaagaatttggcAAAATAATGGATACCACTAACACACCAATATTTAATGAATCTGTAGATATATGTGACAAAAACTATATAAACACAATACAATCTATTGATTTGCAGTCAACATCagataaaaatagtttaatgtcAAATGATTCCGAAAAAaacttaccaaaaaaaaaaattaaggtcaTATGTCCCATTTGTGGGATTTCTACTACTCATTCAAATCTTAGTGTTCACATAATGCGACATAAAGGTGAGAAACCTTTTAAATGTAACCTTTGTGAAATGGCCTTTCCACGAACAGCCGATTTACAGGAGCACCGGCGCAAACACACAGGCGAACGCCCCTTCAAATGTACGATTTGCGATAAAGCATTTGCGCGACAGACAAAATTGCGCGAGCACAAACGATTACATACCGGCGAAAGGCCATATCAGTGTTCATTTTGTCAGAAGTCGTTTAATAAATCAGACTATTTGAAACTACATATGCGTGGTCATACTGGCGAAAAACCTTATACGTGTGATATTTGCAGTAAAGGATTTGTATGTGCATCGTATCTGAAGAAGCATCGCGAATTGACTGGACACACCGAATTATGGTCAACTCCAGAAAACAAATCAAAAGATCTCAAACAGTCTGCAGCCAAAGAGAAGAAGAAAACGTTATGCCCCATATGTGGTGTCTACTTGTCTAGCAAGACAAATCTTACGTTTCACGTGAGAGCCCATACTGGTGAAAAACCTTACAAATGTGATCTTTGCGaaatggcttttaaacgaaaatctGATCTTCAACTACACCGACGGTCACACTTTAGTGATCGTCCCTTTAAATGTACGCAGTGCGATAAATCATTTACCatacaatacaaattaaatactCATATGCGCATGCATACTGGCGAGCGCCCTTACCAGTGcacaatttgttcaaaaaagtttaacagaaaagaatattTGAATCTACATATGCGTAATCATACAGGCGAGAAACCCTTCAGATGTGAGATTTGCGATCAGGCATTTATATGTGAGGCTTATCTCAAAAAACATCGTGTAAAAAAAGGACATCATGTGGAAAACAAGTGA
Protein Sequence
MSKSNESGFFFNEVEYKCRTCFDPGRTVYLLADECKNKKTWRDLLNEVVQLKTSEDEMLPKTLCCKCLDKLISYYDFILQIQNVNRKYSQILANVNDQQQNKILSEVDNFTDCLAESAIALPLGQHVTQIKFEDELVVPYDVLNDSNTILGVSEENSQNEDVNDPFKETCNEEIKLSLEGFQEQKRFLDEDPNQILKEEYSYSKEECSKPAAWRLVKCMLCDAEFSTTKELRQHLPNHRDRNTLHNLKLSDSIVQHWFPNMIDINHIKEVICKDICGNDCFKYYTVLNEYSYEMSVSDTEVEDLEEEAASKYICELCAKEFSYKYEIFSHIKDDHAENEIPLSCSRCELVFVSIKMYEQHRKTHCRNEHKILHCMHCPGKFVWPENMQNHNCPTKMPTSLSDVTENHRKYDTSFREIEDNTKHQENELHTDNDSRTVLSKSVIRCGLCELSFKNLRCLRQHMPLHTDGQTGIDFKSCIYVKQFERSESIDYPILQQQIKNAYIKRQISCFYQAIDKFGNEIDISDSDSDSNIEDNNSENVKKAYACDVCKDMFKERKLLLKHQHERHHTEKLPFTCKDCQKQFVSIHLLQQHLKKECWNEHRRIAQPCDFCNIRFIWPNNMFVHKQIQHFMTKQPVISTMNSMDVTRSINENLATSKTSIPTTSKLLQQTSADVQLRYCFLCPKAFFAIDHLNEHLGRHRLTSSDIKIVETIIHSTWWPNGKKVIKCKICGIIFETMTKLKDHFSSKNTQTVCSNQPHSLASYSITNQKGFELHLELDSETESEDNVEAEGNESNTQPLYPYKCGICSRSFKRKYQIAQHQRSMHNYELLEHKCENCIFRTVSEKILDYHRTTQCLNADKVYGCDQCKFKFMWKENLENHTATFHNLKEFGKIMDTTNTPIFNESVDICDKNYINTIQSIDLQSTSDKNSLMSNDSEKNLPKKKIKVICPICGISTTHSNLSVHIMRHKGEKPFKCNLCEMAFPRTADLQEHRRKHTGERPFKCTICDKAFARQTKLREHKRLHTGERPYQCSFCQKSFNKSDYLKLHMRGHTGEKPYTCDICSKGFVCASYLKKHRELTGHTELWSTPENKSKDLKQSAAKEKKKTLCPICGVYLSSKTNLTFHVRAHTGEKPYKCDLCEMAFKRKSDLQLHRRSHFSDRPFKCTQCDKSFTIQYKLNTHMRMHTGERPYQCTICSKKFNRKEYLNLHMRNHTGEKPFRCEICDQAFICEAYLKKHRVKKGHHVENK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-