Plab018154.1
Basic Information
- Insect
- Pollenia labialis
- Gene Symbol
- -
- Assembly
- GCA_949318255.1
- Location
- OX439140.1:123027271-123029133[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.2e-08 0.00012 23.2 0.0 11 40 404 432 398 436 0.84 2 4 3.4e-14 8.1e-11 43.0 0.0 5 44 451 490 448 491 0.93 3 4 0.025 60 4.9 0.0 27 38 520 531 516 537 0.88 4 4 1.3e-14 3.2e-11 44.2 0.0 4 41 559 596 559 598 0.92
Sequence Information
- Coding Sequence
- atgAATCATTTAAAGTGGATGGGCCATTCGGCCACAATAttagatatacataaaaatctACGAGCAGATTTAAAGAGTTGTGAAGTGACGTTGGTGGCCAAGGGACATTGTGTTAAGGCTCATCGTTTTGTTTTATCATCGTGCAGTGACCTGCTACGGTGCCTGCTTATCGATGTGCCCATTGGGCAGGAATGTTGTGTAATGGTACCCGATATAAAGGGTCACTTGTTGGATAATGTattggcttttatatatttaggtGAATGCTCCTTATCATCCACAAATTTATCTGAGTTTTTAGAAGCCATTAATATATTGGGCATTAAAAGTGCCATTAGTTTCGAATGCAATACAAATGCTTTGCAGACAGCTCAAAGTAGTAGTCAAAGCACTATTACTTTAGATAGCAACACAACCATGGCGCCTGTAAGTAATAATACCTTAGCCAGTGCGCAAGTGACTGTTGGGGGATCTGACGATACATTGCATCAGGAAGAAATAATTGAAACGCAAAGTGTAATTCATAATGAAGCTCATACAGTGGCTGCAAGTGATACAAATAATTCGGGTACAACTAGGGAACTTGATTTTTTAGATGTATATCACGAACCTGAACATAAAATTACATATTCAATAGAACATGTTCCTGGGTCTACAGCTGGAAATGagtttattttaactgaaaactCTGGCACTTTCACTTTAACACACAGTGGTAAATTAGAACCAACTACATCCCCGGCTGAGTCCTCTAATATGGAAATTACAGAGGACGATGGCTGTGATACACATATAATAGAGGAATATAGTAGTGGCGATGAGCCTCTAATACAAATAGGAGAAACTGTGCAAGAACCGCATAGTCTAACAGTTGTTCAGACAGCACAGcatcatcaacaacaacagcacACAACACAAACTCCATCTACGGCAGCAACTACAACTTCTATTATACAAGTTAAACCAAAAATGAAAACCCTTAAGCTAAAACATCCGCAAGCATCACAAAAGTTAATTACCAAAATCGAACAACTTTCCGAGGATACAGCAAGCGATGATCCCATTTCGATACTACAAAGCTCAAATGAAAGTTTTACTTTGCTTAAAGATGCCTCAACGATGTCCACAAGTAACACTAGTCATGACGAGTCAACAGATTTTTCTATGAATAACTCGTGTACATCGGCCGCCGAATTGGCCTATCAAGCTATGGTCACTGAGGGTATGTCTTTACCAAAGGCTGCCGATATATTTAATGTTTCCAAAGCGGAACTATGGCGACGGGTGCGTGGTGCTGAAGTTGAACAGTTAAATAAATCGGTTAAATTGGATCCTGATAAGATTGATGTTTTAGAATTGGCCAGTAAGGCGGTAATAAATGAGGGCTTATCTTTACAAAAGGCCGCCATACGCTATGACATCTCTAAAACCGTTCTGTGGCGCCGGGTACGCAAGCATCCACAGTACATGAAGACAGCACGAGAAAATCCAATTATAACAAAAGCGTATGAGCGCTTAAAATCCGGAGAATCGCTTAAGAGCATATCACAAGACCTAGATATACCCATGTCAACTTTGCATCGGCATAAGGTTCGTCTCTCGCAAACGGGGCAATTGCCTGATTTTGTAACATGCAAAAAACGTGATAGCATGTCCAAAgatgatttaaaattgaaactttCGAAAGCAGTCCATGCCTGCGTACACGAAGGAATGTCGCAAAATCATGCTGCtaatttattccaaatttcGAAGAGTACATTGTGGCGGCATCTGCAAAAACGTGTGGCGGAAGCTGAGGCAGCTGAGACTGAATCTATGGGCGATGAAGATGAAATTAAACAAGAAGTTATACTTTcataa
- Protein Sequence
- MNHLKWMGHSATILDIHKNLRADLKSCEVTLVAKGHCVKAHRFVLSSCSDLLRCLLIDVPIGQECCVMVPDIKGHLLDNVLAFIYLGECSLSSTNLSEFLEAINILGIKSAISFECNTNALQTAQSSSQSTITLDSNTTMAPVSNNTLASAQVTVGGSDDTLHQEEIIETQSVIHNEAHTVAASDTNNSGTTRELDFLDVYHEPEHKITYSIEHVPGSTAGNEFILTENSGTFTLTHSGKLEPTTSPAESSNMEITEDDGCDTHIIEEYSSGDEPLIQIGETVQEPHSLTVVQTAQHHQQQQHTTQTPSTAATTTSIIQVKPKMKTLKLKHPQASQKLITKIEQLSEDTASDDPISILQSSNESFTLLKDASTMSTSNTSHDESTDFSMNNSCTSAAELAYQAMVTEGMSLPKAADIFNVSKAELWRRVRGAEVEQLNKSVKLDPDKIDVLELASKAVINEGLSLQKAAIRYDISKTVLWRRVRKHPQYMKTARENPIITKAYERLKSGESLKSISQDLDIPMSTLHRHKVRLSQTGQLPDFVTCKKRDSMSKDDLKLKLSKAVHACVHEGMSQNHAANLFQISKSTLWRHLQKRVAEAEAAETESMGDEDEIKQEVILS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00199788;
- 90% Identity
- iTF_01237802;
- 80% Identity
- iTF_01237802;