Basic Information

Insect: Pollenia griseotomentosa
Gene Symbol: -
Assembly: GCA_963931875.1
Location: OZ007564.1:24746307-24756557[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 2.6 4.3e+02 3.5 0.3 2 20 438 456 437 458 0.92

2 16 0.057 9.4 8.7 2.7 2 19 504 521 503 523 0.94

3 16 4.7 7.9e+02 2.6 0.5 3 23 566 587 565 587 0.93

4 16 0.0078 1.3 11.4 1.2 2 23 594 615 593 615 0.96

5 16 0.00052 0.087 15.1 2.3 1 23 622 645 622 645 0.95

6 16 0.00028 0.046 15.9 4.1 2 23 653 674 652 674 0.97

7 16 1.2 2e+02 4.5 0.0 1 21 683 703 683 704 0.91

8 16 0.095 16 8.0 3.9 1 22 724 745 724 748 0.91

9 16 1.5 2.5e+02 4.2 7.3 1 23 753 775 753 775 0.90

10 16 0.035 5.7 9.3 0.3 1 23 791 816 791 816 0.97

11 16 0.029 4.9 9.6 1.7 1 23 828 851 828 851 0.97

12 16 7e-05 0.012 17.8 2.1 2 23 856 878 855 878 0.97

13 16 0.039 6.5 9.2 3.7 2 23 882 904 881 904 0.95

14 16 2.7 4.4e+02 3.4 2.6 1 23 932 954 932 954 0.96

15 16 1.3 2.1e+02 4.4 5.1 1 23 960 982 960 982 0.96

16 16 0.29 48 6.4 0.5 5 23 998 1017 988 1017 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	2.6	4.3e+02	3.5	0.3	2	20	438	456	437	458	0.92
2	16	0.057	9.4	8.7	2.7	2	19	504	521	503	523	0.94
3	16	4.7	7.9e+02	2.6	0.5	3	23	566	587	565	587	0.93
4	16	0.0078	1.3	11.4	1.2	2	23	594	615	593	615	0.96
5	16	0.00052	0.087	15.1	2.3	1	23	622	645	622	645	0.95
6	16	0.00028	0.046	15.9	4.1	2	23	653	674	652	674	0.97
7	16	1.2	2e+02	4.5	0.0	1	21	683	703	683	704	0.91
8	16	0.095	16	8.0	3.9	1	22	724	745	724	748	0.91
9	16	1.5	2.5e+02	4.2	7.3	1	23	753	775	753	775	0.90
10	16	0.035	5.7	9.3	0.3	1	23	791	816	791	816	0.97
11	16	0.029	4.9	9.6	1.7	1	23	828	851	828	851	0.97
12	16	7e-05	0.012	17.8	2.1	2	23	856	878	855	878	0.97
13	16	0.039	6.5	9.2	3.7	2	23	882	904	881	904	0.95
14	16	2.7	4.4e+02	3.4	2.6	1	23	932	954	932	954	0.96
15	16	1.3	2.1e+02	4.4	5.1	1	23	960	982	960	982	0.96
16	16	0.29	48	6.4	0.5	5	23	998	1017	988	1017	0.86

Sequence Information

Coding Sequence: ATGGCGGTAAGAGTTCCAACCACCACCAGAGTTTGTTTGAATTGCAAAATAAACTCGGATGCTAATGCTGGAAAGGAATTTCATGAAATCTTTGATGAAGTGGGTTTAGAATTGCAATTACCCTTTTTagtcaaaacattttttcacatcaatttaaacaaaaaggaTGAACAACATCTTTGTGATGACTGTGTTAATCGTTTAATTGAATTATATGATGTGATGGAGCACACCAAAAAAGAAAGTTGTaagacaaataatttaaaaaatacgcCGGAATGTATTAATAATGAAGAAAGTAGTAAATACTCTAAAAAGGAAAGTGGACATTTTAGATACGAACGTGAAAACTTTCATCAACCTTTTATTATTGATCAAAATAATACTCAAGTTAATTTACCCAAAAGTAATTCCATTGCATACACaaactttaaaacttttgcttcaaCACAAGCAGAAAATGCCATAGAAATTAATGAACAAAATAGATCTGAACGTACGgaatatgaaaatattgaaaatgtagGATATTTCTTTAAGCAAAACAGCTCTTCACCTTTTACCCAGCAACAGaaccaaagaaaaattaatgatATTGCTCAGCATTTCCCAGGAGAGGATTTTCAACAAACCGGTGAAAAGAAAGTTTCACAAGATTTCAATGAACATATTGAATTTATCAGCGATGATGAAAACCACAATGTGGGAATAAACGAACCGTATAATGCAAACATCATTGTTGGTTCTAAAAAATTAGAAGGAAAAGAAAGGGAAGTTTCACAAGATTCCATTATTTCGTTATCGTCTAGTGAAAAATCAGATGAAGTAGAATCCAATGAACGTATTATATTTATCAGCGATGATGAAAACCAAAATGTGGAAATAAACAATCAGTCTAACACAAACATAATAGTTGATCTATGCGAAGAGGTAGATGAAGCTGTAGAAGCTTACATACCAAAcaaaattcataacaaaaatGAAGGTCAGAAAGATTTACATGTTAAAGTAGTCGATGATCGGTCAAATCGAGTTAAAAACATTGATGATTCAAACTCATTACTAGAAGAActtaaaataattgaagaaaatgTAAGTAGTAGAGCaacagaatttaataatatAGAACACATTGGTGCCGATAATTTTATTGTGCAGGAAGGAATATCTAATGAAACATGTTCATTGGAAAACGAGTATTTAATGAATGaaactATTTTGTCTGAGGACTACGATAATGTTGATTTGAATGAATATTTGAATAAGGTACTAGGAACAAAATTTCAAGACTTAATATTAAATTGGGAAATGGAATGTAAAttgtgCCTTGAAAAATATTACTCCCTTGGAGAATTACTAAATCATGCGTGTTTGACAGAATCCGCAAAGGAGCAACGATTCTCTTGTATTGTTAAAGAATGCGAAAAACATGCAAACGATTTACCAACTTTAGCAAGACATTTAGTACTAAAACATTATGATAAATTAGAAAGtacccccatctatggtaaATGTACAGATTGccgaaaaacattttcaaatgttttagAATTCAATAAGCATTCTTGCTGTcgaaatataaaacaaaagatTGGCACAccaaagtattgtaaatattgcGATTTGAATTTTCAATCTTTCAAAAGatATGTCTTTCATATGCAGTTCCATTTAAAAAACCATAGGCCAAAAATTTGCTTATTATGTGGTGATTTATTCAATAATTCTAATGATTTCTTTGAACATACTCAATATAAACATAATCCAAAAACTGCTTTGACGTGTGTAAgATGTGACCGCTTTTTTAAggatataaaagtttttaataatcatATGAAAGTGCATGATGATTCTAAATGCCTGCATGAATGTGCACATTGTCCAAACAAATATACTACTAAATCTGCTTTAAATCAACATATGGATATTTATCATAACAACAAATCTAATGCCTTACAATGTGaatattgttcaaaaaaattttgttataaaatagcATATCGTAATCATATCAAAACTCATGCTGCAGATGccaaaatacaaacatttatatgCTCAACATGTGGCTTAATAACTAGGAATATGGAAATGATAAAGgTACATATCGAGTCAGATAAAGAATCTGTTTGCTTTTCTTCGCCGGTTGAAGAGAAAATTTTAGGTTTGGTTTATTCATGTGAAAATTGTTCCTTAGatttttgtacaataaaacatcTTAAAGATCATCGTTTAAGTGATAGTCACAGTGATGATATATTCAAATGTAGTATCTGCAAAACAAGCTTCAATACTTTAAATCACATGCGTTGCCATTCCAGTAAACATAAGGATTGCAAAGAATGGCAGGAATCATTTCCAATAACTAGAAATTTTGTATGCAATATAGgggaTTGTCAGGAGTTTTATTCCATTTGGAGCTCTTTATATTACCACAAAAAACGTCCTCATAAAACTGAAGAAAAAACCAATTCTCCAACAGAGTTTAAATGCCAATTTTGTCATCAGTTGTACTCTGTAAAACAGTCTTTGGCTGTTCATATAGCTAGAAGTCATAAtgaaggaaataaatgttcttattgcaagagaaattttaattcccaaaatatgttacaaaaacaTATTGATACATTGCATACACCCGTCGAATGTGATAtctgttttatgaaatttaaacatCGACTCCATTTAGAAACACACTTTAATTCCGAAcatagtaataaaaatattcaaaatggaTATTTTCATATGAATAAAGGAAATTTACATGAGAAGAAAGTTCACCATAATAATACCTTTATATGTAAATTATGCAATTTTGAAACCACTTGTCCGACATCTTTGAAAAATCATGTGGACAAACATAATAATCAGcctaaatttaaatgtttaatttgtaGCAAATTATTTGGACGCAAGAAACTATTAGAGTGTCActttaaaaaacatcaaaataaaaggaaCTACAGTTGTGCACGTTATTTGAATGAAAGTGGCTGTgatgcttatttttttaattataaacttCTTAAAAAACATGCACAAACTAAACATGAAAACTCAACTTttagtattaatttaaaaataaaaaaacaacgaaaaacaGATCATGACGTTGTGCAATTTGAGAATGTTTCCTGTAACACATTGACTTGTGACGATAGCAGTAAATATGAAAACCAGGCTAAAACATCACACGACGTACATTTTACCGATGAAGATTTCGAACAAGATGCTATTGTTTCAAACTTGGAAGATGACATGGAATTCGAAGAACAGAAACCTGATACCGAGAGTTTAACAATATGA
Protein Sequence: MAVRVPTTTRVCLNCKINSDANAGKEFHEIFDEVGLELQLPFLVKTFFHINLNKKDEQHLCDDCVNRLIELYDVMEHTKKESCKTNNLKNTPECINNEESSKYSKKESGHFRYERENFHQPFIIDQNNTQVNLPKSNSIAYTNFKTFASTQAENAIEINEQNRSERTEYENIENVGYFFKQNSSSPFTQQQNQRKINDIAQHFPGEDFQQTGEKKVSQDFNEHIEFISDDENHNVGINEPYNANIIVGSKKLEGKEREVSQDSIISLSSSEKSDEVESNERIIFISDDENQNVEINNQSNTNIIVDLCEEVDEAVEAYIPNKIHNKNEGQKDLHVKVVDDRSNRVKNIDDSNSLLEELKIIEENVSSRATEFNNIEHIGADNFIVQEGISNETCSLENEYLMNETILSEDYDNVDLNEYLNKVLGTKFQDLILNWEMECKLCLEKYYSLGELLNHACLTESAKEQRFSCIVKECEKHANDLPTLARHLVLKHYDKLESTPIYGKCTDCRKTFSNVLEFNKHSCCRNIKQKIGTPKYCKYCDLNFQSFKRYVFHMQFHLKNHRPKICLLCGDLFNNSNDFFEHTQYKHNPKTALTCVRCDRFFKDIKVFNNHMKVHDDSKCLHECAHCPNKYTTKSALNQHMDIYHNNKSNALQCEYCSKKFCYKIAYRNHIKTHAADAKIQTFICSTCGLITRNMEMIKVHIESDKESVCFSSPVEEKILGLVYSCENCSLDFCTIKHLKDHRLSDSHSDDIFKCSICKTSFNTLNHMRCHSSKHKDCKEWQESFPITRNFVCNIGDCQEFYSIWSSLYYHKKRPHKTEEKTNSPTEFKCQFCHQLYSVKQSLAVHIARSHNEGNKCSYCKRNFNSQNMLQKHIDTLHTPVECDICFMKFKHRLHLETHFNSEHSNKNIQNGYFHMNKGNLHEKKVHHNNTFICKLCNFETTCPTSLKNHVDKHNNQPKFKCLICSKLFGRKKLLECHFKKHQNKRNYSCARYLNESGCDAYFFNYKLLKKHAQTKHENSTFSINLKIKKQRKTDHDVVQFENVSCNTLTCDDSSKYENQAKTSHDVHFTDEDFEQDAIVSNLEDDMEFEEQKPDTESLTI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -