Pgri048838.1
Basic Information
- Insect
- Pollenia griseotomentosa
- Gene Symbol
- -
- Assembly
- GCA_963931875.1
- Location
- OZ007564.1:39483904-39485856[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.34 56 6.2 0.9 3 23 275 296 273 296 0.95 2 10 0.35 58 6.2 1.8 6 21 305 320 305 322 0.94 3 10 0.0011 0.19 14.0 0.6 1 23 328 351 328 351 0.97 4 10 0.0033 0.55 12.6 3.0 1 23 360 382 360 382 0.96 5 10 0.076 13 8.3 1.0 1 23 390 413 390 413 0.86 6 10 0.0022 0.37 13.1 0.3 3 23 421 441 420 441 0.97 7 10 0.028 4.6 9.7 0.1 2 23 450 472 449 472 0.94 8 10 0.00044 0.074 15.3 1.1 1 23 480 503 480 503 0.95 9 10 5.4e-05 0.0089 18.2 2.1 1 23 509 532 509 532 0.95 10 10 4.9e-06 0.00082 21.5 1.6 1 23 538 561 538 561 0.98
Sequence Information
- Coding Sequence
- aTGGAGTCTTGTTTATTGTGTTTGGATATAAATAAAGATATATTGGATTGCATTAAGGCGGATTCAGTACGATGGCAAGAGTTGGACATAGCAAATACgatagaaaaacatttttggacacTGAACACCATTAAATCTAGTTCATGGGTATGTTTATCATGCTGGAGGGAGTTAGATGATTTTCACAAATTCTATTTGCGCGTAGAGGAGGCTCACAAGgattttggtaaaattaaaattgaagaGAATGAAGTACCTGCACAATGTAAGAAAGAATTGGCaattccaaaaacaaaaatgaaagaaaacgaagaaaataaaaatttagataaCATGGCATATTGCTTTCTGGAACCAGAAATACTTATAGATCAACCGCTAACCCCAGAATTCGTGGCGGATAAAGAAACCGAAAAGAAGAAGCCTTTTGATGATATAGATTTGGATGATATTCCATTAAAACAAGCCTGTAAACGCTTCAAATTACAAAACAACTTAGTAAACAATGATCCCCTAGAGAAGTTGGATAAACCAATTGTCAAGTCCAGGACAAGGAAATCTAAAGCAACTGCAGCGGGTAATAAAGTAATAACTGAAGATAGCAAGTCAATGGGgtttcaagtaaaaaaagaaccaAAAGATTTAAATGATAACGATTCAGAGAGCGTTAGCGATAATGACAACGAAGACTCAGATGTTAATTTTCAACCAGATAAAAATCCTTCCTCAGAAACTGCAAAAACTAAAACACAAAAGACtctcacaaaaaaacaacaaaaagaaaatgataaatttatagCTGAGCATTTTAAGCAAATGTTTTGTGATCTTTGTCAATTACCATTCCAAGACTTTGCCACCATGCAAAAACACTTTAACAAGACTCACAAACGTCGTGGCTATCTGGTGTGctgtaaaagaaaatttagcGATCGGTCTAAATTGGTGGACCATCTTAACTGCCATTTAAATCCGGATCATTTTAAATGCCGCGAATGTGGCAAAATTATGGCCGAACGTTCTACTTTTAATAACCACATGTTACGCGTTCACAGAGCTAGTGAGattgtaaaaaaacattgttgTGATGTTTGTGGAAAATCCTTTACAATAGAAAGAGTATTAAGAATTCATAAATTAACTCATTTACCAGAAGAGGAGAAAAAGTACCCTTGTAGCGATTGTGGTAAGAAttacgGAAGTTTTTACATACTCCACCAACATAAGCAAGCTGTGCATCTTAAGCGATTTGTGAAAATCTGTTACATATGCGGCAAAGCGATAAATTCAAGTGCTAAATTTAAGCTACACATGAATCAACATGAAGGCATTCCTCCGCCCGTTATCAGTTGTGATGTTTGTGGTCTACGTGTGACTACTGAACGAGGTCTTAAACTGCATAAAGAATCCCAACATCCGGTTGGGGGGAAAAAAGAACATCACTGTCCCATCTGTCCTAAAATATCTCCTACTTTAAAGGCTCTTAGGAAACATATAAGTTCTATGCATAAAAAGGGATGCGATCACAAGTGCAGCTTTTGTGAAAAAGCTTTTAAGAGATCAGAAAGTTTAAGGgaACATGTGGCTTCACAACATACTGGAATAGTATTATACACCTGCCCTTGGTGTCCAAAGACGTTTAATTCTAATGCAAATATGCATGCACATCGCAAAAAAATGCATCCTAAAGAATGGatagaaacaaaattacaaaagtaTTCGGGTAATTTACATCCcgataaataa
- Protein Sequence
- MESCLLCLDINKDILDCIKADSVRWQELDIANTIEKHFWTLNTIKSSSWVCLSCWRELDDFHKFYLRVEEAHKDFGKIKIEENEVPAQCKKELAIPKTKMKENEENKNLDNMAYCFLEPEILIDQPLTPEFVADKETEKKKPFDDIDLDDIPLKQACKRFKLQNNLVNNDPLEKLDKPIVKSRTRKSKATAAGNKVITEDSKSMGFQVKKEPKDLNDNDSESVSDNDNEDSDVNFQPDKNPSSETAKTKTQKTLTKKQQKENDKFIAEHFKQMFCDLCQLPFQDFATMQKHFNKTHKRRGYLVCCKRKFSDRSKLVDHLNCHLNPDHFKCRECGKIMAERSTFNNHMLRVHRASEIVKKHCCDVCGKSFTIERVLRIHKLTHLPEEEKKYPCSDCGKNYGSFYILHQHKQAVHLKRFVKICYICGKAINSSAKFKLHMNQHEGIPPPVISCDVCGLRVTTERGLKLHKESQHPVGGKKEHHCPICPKISPTLKALRKHISSMHKKGCDHKCSFCEKAFKRSESLREHVASQHTGIVLYTCPWCPKTFNSNANMHAHRKKMHPKEWIETKLQKYSGNLHPDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01236084;
- 90% Identity
- iTF_01236084;
- 80% Identity
- -