Basic Information

Insect: Pollenia griseotomentosa
Gene Symbol: -
Assembly: GCA_963931875.1
Location: OZ007564.1:39393765-39395707[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.14 23 7.4 0.6 3 23 276 297 274 297 0.95

2 10 0.35 58 6.2 1.8 6 21 306 321 306 323 0.94

3 10 0.0011 0.19 14.0 0.6 1 23 329 352 329 352 0.97

4 10 0.00015 0.025 16.8 3.8 1 23 361 383 361 383 0.96

5 10 0.0035 0.58 12.5 0.5 1 23 391 414 391 414 0.94

6 10 0.00089 0.15 14.4 0.2 3 23 422 442 421 442 0.97

7 10 0.045 7.4 9.0 0.2 2 23 451 473 450 473 0.94

8 10 0.0001 0.017 17.3 1.2 1 23 481 504 481 504 0.96

9 10 9.2e-05 0.015 17.4 1.5 1 23 510 533 510 533 0.95

10 10 4.9e-05 0.008 18.3 2.0 1 23 539 562 539 562 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.14	23	7.4	0.6	3	23	276	297	274	297	0.95
2	10	0.35	58	6.2	1.8	6	21	306	321	306	323	0.94
3	10	0.0011	0.19	14.0	0.6	1	23	329	352	329	352	0.97
4	10	0.00015	0.025	16.8	3.8	1	23	361	383	361	383	0.96
5	10	0.0035	0.58	12.5	0.5	1	23	391	414	391	414	0.94
6	10	0.00089	0.15	14.4	0.2	3	23	422	442	421	442	0.97
7	10	0.045	7.4	9.0	0.2	2	23	451	473	450	473	0.94
8	10	0.0001	0.017	17.3	1.2	1	23	481	504	481	504	0.96
9	10	9.2e-05	0.015	17.4	1.5	1	23	510	533	510	533	0.95
10	10	4.9e-05	0.008	18.3	2.0	1	23	539	562	539	562	0.98

Sequence Information

Coding Sequence: atGGAGTCTTGTTTATTGTGTTTGGATATAAATAAAGATATATTGGATTGCATTAAGGCGGATTCAGTACGATGGCAAGAGTTGGACATAGCAAATACgatagaaaaacatttttggacacTGAACACCATTAAATCTAGTTCATGGGTATGTTTATCATGCTGGAGGGAGTTAGATGATTTTCACAAATTCTATTTGCGCGTAGAGGAGGCTCACAAGgattttggtaaaattaaaattgaagaGAATGAAGTACCTGCACAATGTAAAAAAGAATTGGCAATTcctaaaacaaaaatgaaagaaaatgaagaaaataaaaatatagataaCATTGCATATTGCTTTCTGGAACCAGAAATACTTATAGATCAACCGCTAACCCCAGAATTCGTGGAGGATAAGGACACTGAAACGGCGAAGCCTTTGTATGACATAGATTTAGACGATATTCCATTAAAACAAGCCTGTAAAcgcttaaaattacaaaataacttAGTAAACAATGATCCCCTAGAGAAGTTGGATAAGTTAGATGTGAAGTCCAGGAAAAGGAAATCTTTTAAAGCAGCAGCAGCGGTTAATAAAGTAATAACTGAAGATAGCAAGTCAATGGACTTACAAATAAAAGAAGAACCTAAAGATTTAAATGATAACGATTCAGATAGCGTTAGCGATAATGACAACGAAGACTCGGATGTTAATTTTCAACCAGATAAAAATCCCTCCTCAGAAACGGCAAAAACTAAAACACATAAGACTCTTACTAAAAAACAACAGAaagaaaatgataaatttatagCTGAGCATTTTAAGCAAATGTTTTGTGATATTTGTCAAGTACCATTTCAAGACTTTGCCACCATGCAAAAGCACTTTAACAAGACTCACAAACGTCGTGGCTATCTTGTGTGctgtaaaagaaaatttagcGATCGTTCTAAATTGGTGGACCATCTTAACTGCCATTTAAATCCGGATCATTTCAAATGCCGCGAATGCGGCAAAATTATGGCCGAACGTTCCACTTTTAACAACCACATGTTACGCGTTCACAGAGCTAGTGAGATTGTTAAAAAACATTGTTGTGATGTTTGTGGTAAATCCTTTACAAAGGAAAGTGTATTAAGAATTCATAAATTAACTCATTTGTCGGAAGAGGAGAAGAAATACCCTTGTAGCGATTGTGGTAAAAAttatGGCAGCTCTTACATACTCCACCAACATCAACAAGCTGTGCATCTTAAacgatttgttaaaatttgttacGTATGCGGCAAAGCGATAAATTCAAGTGCTGAGTTTAAATTACATATGAATAAGCACGAAGGCGTTCCCTTGCCCGTTATCAGTTGTGATGTTTGTGGTCTACGTTTGACTAGTGAACGAGGTTTAAAATTGCATAAAGAATCCCAACACCCGGTGGGTGGAAAACAAGAACATCACTGTCCCATCTGTCCTAAAATATCACCCACTCTAAAGGCTCTAAGGAAACATATTAATACTATGCATAAAAAGGGTTACGATCACAAGTGCAGCTTTTGTGAAAAAGCTTTTAAGAGATCGGAAGGTTTAAGGGAGCATGTGGCTTCACAACATACAGGCACGGCTTTATACACCTGCCCTTGGTGCCCGCAAACTTTCAATTCTAATGGCAATATGCATTCCCATCGCAAAAAAATGCATCCTAAAGAATGGTTGGAATCAAAACTAAAGAAGTATTCTGGAAATATACCaccagaaatttaa
Protein Sequence: MESCLLCLDINKDILDCIKADSVRWQELDIANTIEKHFWTLNTIKSSSWVCLSCWRELDDFHKFYLRVEEAHKDFGKIKIEENEVPAQCKKELAIPKTKMKENEENKNIDNIAYCFLEPEILIDQPLTPEFVEDKDTETAKPLYDIDLDDIPLKQACKRLKLQNNLVNNDPLEKLDKLDVKSRKRKSFKAAAAVNKVITEDSKSMDLQIKEEPKDLNDNDSDSVSDNDNEDSDVNFQPDKNPSSETAKTKTHKTLTKKQQKENDKFIAEHFKQMFCDICQVPFQDFATMQKHFNKTHKRRGYLVCCKRKFSDRSKLVDHLNCHLNPDHFKCRECGKIMAERSTFNNHMLRVHRASEIVKKHCCDVCGKSFTKESVLRIHKLTHLSEEEKKYPCSDCGKNYGSSYILHQHQQAVHLKRFVKICYVCGKAINSSAEFKLHMNKHEGVPLPVISCDVCGLRLTSERGLKLHKESQHPVGGKQEHHCPICPKISPTLKALRKHINTMHKKGYDHKCSFCEKAFKRSEGLREHVASQHTGTALYTCPWCPQTFNSNGNMHSHRKKMHPKEWLESKLKKYSGNIPPEI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01236084;
90% Identity: iTF_01236083;
80% Identity: -