Basic Information

Insect: Pollenia griseotomentosa
Gene Symbol: -
Assembly: GCA_963931875.1
Location: OZ007563.1:175833634-175835385[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 6.8e-05 0.011 17.9 0.8 1 23 266 288 266 288 0.98

2 8 1.2e-06 0.0002 23.4 1.3 1 23 305 327 305 327 0.99

3 8 9.5e-06 0.0016 20.6 1.3 1 23 333 355 333 355 0.95

4 8 0.00054 0.089 15.0 0.2 1 23 361 383 361 383 0.96

5 8 3.4e-05 0.0057 18.8 0.5 1 23 389 411 389 411 0.96

6 8 0.00096 0.16 14.2 5.1 1 23 417 439 417 439 0.98

7 8 1.2e-06 0.00019 23.4 0.6 1 23 445 467 445 467 0.98

8 8 0.00021 0.035 16.3 1.1 1 23 473 495 473 495 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	6.8e-05	0.011	17.9	0.8	1	23	266	288	266	288	0.98
2	8	1.2e-06	0.0002	23.4	1.3	1	23	305	327	305	327	0.99
3	8	9.5e-06	0.0016	20.6	1.3	1	23	333	355	333	355	0.95
4	8	0.00054	0.089	15.0	0.2	1	23	361	383	361	383	0.96
5	8	3.4e-05	0.0057	18.8	0.5	1	23	389	411	389	411	0.96
6	8	0.00096	0.16	14.2	5.1	1	23	417	439	417	439	0.98
7	8	1.2e-06	0.00019	23.4	0.6	1	23	445	467	445	467	0.98
8	8	0.00021	0.035	16.3	1.1	1	23	473	495	473	495	0.99

Sequence Information

Coding Sequence: atgaatAGTAGAACTATTACAATCTTGGAAAGCTTTTGTAGAACCTGTATGAATGGTGAAGAAGAAGGTGATAAAGAGACTGAAAGCAAAAAACCCAAAACTATTTCGATTTTCAATAAATCTGAGAGTATGgaatgcaaaaatataacaattatgGAATTACTTATGCTTACTACACCACAATTGAATATCGAAAGTAGCGATATGTTGCCTAAAACTTTATGTGAGAATTGTCTTGAAAAACTTATAAATGCCtacaaattccaaaaaatgtGCATAAGAGTTGAACAAAAGTTTCGACAAATGATCAAAGAACAAAGTCCAGTTAATGCAGACCCCCTTAAGGATAGTGTTATAGATAACTTTCCAATTGACAGTGTATCCGTTACTGATGCTATTAATGatttaagtaatattttaaaaatagaaatggATGAACCATTGATAGATCAGAATGAGCCGCctttcaccaaaaaaagtgtTATTGAGGATACTGAAGATATAAAATTTGAAGCGGAAGACAATCGTTGGGATGACTTAATTGATAGTGAAGAATCCTGTAGTGTATATAGTGACAAAGATAGCAGTTGGGAATCTCcgccaaaatttataaaaagtaaaaaaaatacgaagacagcaacaaaaaaagtaaaagaaaaaggtGTATTTTCAAATAAGCAAGCGATATCTGAAGGGAATGCTAAAAATAAAGAGGAGCATTCTTCTGAAATAACAGAAGAGTCTGGGAAAATTGACCAGACCACTGAAAATATTAAGGATAATAGagaaaagaaatttgtttgtgacGAATGTGGAAACCGTTTAGCAACGAGAAAAAGTTTGAAACGACACAAACGAATACATCTTAGACCGGTGGGTGAGAGTCAGAAAAATTCTctagttaaaacaaaatatgaatgcgaattttgtaaaaaagTGTTTCAGCAATCCAGTTCTTTAAAGGATCATTTGAGAATACATACTGGAGAGCAACCATATCTTTGTTCGGAATGCGGAAAAGCTTTTAAGAGTTTAAGTAACATGAAGCAACATTTTCTACGTCACGGTACCGACAGACCATATGTGTGTCCAGATTGTCCCAAAAGATTTCCTTGTTTAAGTGATTTGGCCTCCCACAAAGCTgtacataataaaaagaaatcacATGTTTGTGATATATGTGGTGCCGCCTTTGTGAAACCATATCTATTGAAGAAGCACAAAATGTATCACACTGGTGAAAAAAATCACAAGTGTGATTACTGTGATATGAGatttgttttggctgatcaatgTCGAAGGCATATGCGCACCCATACTGGAGAAAAGccatacaaatgtaaatattgtGAAAGGGCTTTTGCACAAAGTAATGATTTAGTAAAACACTTACGTGGACATTTAGGGGATAATGTATATAAATGTGATCTATGTCCACAAGGTTTCCGCTTACACGGGGACTTACGTGCACATTTTAATACCCACAAAAATGATGATGAAGAAACGAGAGCACGAAACTTGCAGGCCCTTAAAGATGAAGAGCTCAGACTTCAAATGAAGTTTGGCCTTGTTGaatgtacataa
Protein Sequence: MNSRTITILESFCRTCMNGEEEGDKETESKKPKTISIFNKSESMECKNITIMELLMLTTPQLNIESSDMLPKTLCENCLEKLINAYKFQKMCIRVEQKFRQMIKEQSPVNADPLKDSVIDNFPIDSVSVTDAINDLSNILKIEMDEPLIDQNEPPFTKKSVIEDTEDIKFEAEDNRWDDLIDSEESCSVYSDKDSSWESPPKFIKSKKNTKTATKKVKEKGVFSNKQAISEGNAKNKEEHSSEITEESGKIDQTTENIKDNREKKFVCDECGNRLATRKSLKRHKRIHLRPVGESQKNSLVKTKYECEFCKKVFQQSSSLKDHLRIHTGEQPYLCSECGKAFKSLSNMKQHFLRHGTDRPYVCPDCPKRFPCLSDLASHKAVHNKKKSHVCDICGAAFVKPYLLKKHKMYHTGEKNHKCDYCDMRFVLADQCRRHMRTHTGEKPYKCKYCERAFAQSNDLVKHLRGHLGDNVYKCDLCPQGFRLHGDLRAHFNTHKNDDEETRARNLQALKDEELRLQMKFGLVECT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01237941; iTF_01235993;
90% Identity: iTF_01237941; iTF_01235993;
80% Identity: -