Basic Information

Insect: Pollenia griseotomentosa
Gene Symbol: -
Assembly: GCA_963931875.1
Location: OZ007560.1:217519494-217526163[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00015 0.025 16.8 1.2 2 23 212 234 211 234 0.97

2 9 0.6 99 5.5 2.0 1 23 305 328 305 328 0.93

3 9 0.003 0.49 12.7 0.3 2 23 416 438 416 438 0.97

4 9 1.3e-07 2.2e-05 26.4 1.4 2 23 446 468 445 468 0.95

5 9 0.0025 0.41 13.0 4.4 1 23 490 512 490 513 0.95

6 9 0.0002 0.033 16.4 1.4 1 23 519 541 519 541 0.96

7 9 1.1e-05 0.0018 20.3 1.8 1 23 547 569 547 569 0.99

8 9 2e-08 3.3e-06 29.0 3.0 1 23 575 597 575 597 0.99

9 9 5.3e-05 0.0087 18.2 0.6 2 23 604 627 603 627 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00015	0.025	16.8	1.2	2	23	212	234	211	234	0.97
2	9	0.6	99	5.5	2.0	1	23	305	328	305	328	0.93
3	9	0.003	0.49	12.7	0.3	2	23	416	438	416	438	0.97
4	9	1.3e-07	2.2e-05	26.4	1.4	2	23	446	468	445	468	0.95
5	9	0.0025	0.41	13.0	4.4	1	23	490	512	490	513	0.95
6	9	0.0002	0.033	16.4	1.4	1	23	519	541	519	541	0.96
7	9	1.1e-05	0.0018	20.3	1.8	1	23	547	569	547	569	0.99
8	9	2e-08	3.3e-06	29.0	3.0	1	23	575	597	575	597	0.99
9	9	5.3e-05	0.0087	18.2	0.6	2	23	604	627	603	627	0.90

Sequence Information

Coding Sequence: ATGAATGAAAATTCTGTAAGCAAATGTAGAACATGTCttaaaaatagtgaaaaaacctTTCCGCTTTCCAAATATGCTACGGAGTGTAATCCTAATACCACATATGGGCAACTTTTACAGGAATATGCCAAATTAGAGtgTCTTAGTGATTATGAACACCTTATGCcacaaaatttatgtattttgtgTTGCCGTCAGTTAGGaaatgtttacacttttatACGACAAGCTCAATATTGTAATAATAAACTCATAAATCTTATTTCTAAACAATTAACTggaaaaaacattaattttccaCCTagtagtgaaaaaaaatttaaaaaatctattgtCATTAAAAGGGAAAAGGATATTGATGATAGTAGCGCAATAGAACAAAGTTCACAGTATCCTGACACAATAAATGAGTTTAGAATTGTAAGCACAAGTGTGCTTTTAAAATCTGAAGTTTTGGAGGAATCAACAGAAAACAATGGACCTAAACAATATAGTGTTGATGATAACGATGAAATGGAATTAAATGAAAACCCTCCGAATGACTCAAATAATTGTGCAATAGAATGTTCATTTATAACAACCGATTCTCACTTAACTGATAATACCGAGACCTCCAATTCTCCAACTACTAAAACTTGTCCCATATGTAAGAAAACAATTAGTCCTCACCAAAATTTAATAACGCACATGCGAATTCAACACGATATTGAAGCACCCACTAAGTATTTAAACAAACAGAATGCAATACAAcggaattatataaaaaataaaaatatcaatattaagAAATTAAGAGTAATTCAAAAACCTAAAGAAAGAATTTTCAAATGTCGTTCATGCAATTATGCAGCCAATACGTATGCGGCTATGGATTTTCACAATCGTTCAAAACATGATGCTAAAGAggataaatttaaatgcaaattttgttcatatatgACTTTTCAGAAATTAAGCTTATTAATGCATGTCGAAAATTCACACGAAGAACTGATAAGAAATCTTAAGGCTGACgctgaaaacaaaaataacagggaaactttaaatattgttaataaaacacCGTCGTCAGTTGGAGAGTCTCAACATGGAAATTCTTCTAGCGATGATAATTTACCATTGTCCCAGCAAATAATTTCATTTCCCACATCAACCAATAAGCCCAAAGAAAAGGATTTAAGTGATGAAatgtataaaagaaatattttagacataaaaacaatatcaacaaaatttttacccAGACGTTGTGATTTATGtggaaatatttataataatttaagagCTCTTAAGACCCATGTAAAAACCGTTCATATCAGTGAAGAAAATTACAGTGTATGTCCGCATTgtggtaaaaaatttaaacgacgagcaaatttaagaattcatataaaaaatgcTCATATTCCCAAGAGTTCTACAGAAACTGTTAAGCCCACAACAGCACCTAAATTGAAAGAGAAACGCTTCATGTGCACCGAATGTTCTTATGTTTGTAGTACGATAAGTACTTTAACGATTCATACAAATCGTCATCATACAGGTGAAAAACCTTATAAATGTGATATATGCTATAAATCGTTTATAGTGcggtttgatttaaaaattcatcGCTATTTGCATACCGGTGAAAAGCCATATAAATGTCCGTTTTGTTTAAAGGGTTTCCGCAATACTTCACAATTAGTTAAACACAAACGTATACACAACAATGAACGACCGTATAAGTGCAAAGAATGTGGCAAAAGTTTTACACAATCTTATAACTTAACACTGCACAAACGAATGCATCTGAaggagaaaaatttaaattgttcaatatgtgataaatttttcgaaaataaatctttattaaatatGCATCGTATCACTGAAAATCATTCCGATGAAGTTGTGTAA
Protein Sequence: MNENSVSKCRTCLKNSEKTFPLSKYATECNPNTTYGQLLQEYAKLECLSDYEHLMPQNLCILCCRQLGNVYTFIRQAQYCNNKLINLISKQLTGKNINFPPSSEKKFKKSIVIKREKDIDDSSAIEQSSQYPDTINEFRIVSTSVLLKSEVLEESTENNGPKQYSVDDNDEMELNENPPNDSNNCAIECSFITTDSHLTDNTETSNSPTTKTCPICKKTISPHQNLITHMRIQHDIEAPTKYLNKQNAIQRNYIKNKNINIKKLRVIQKPKERIFKCRSCNYAANTYAAMDFHNRSKHDAKEDKFKCKFCSYMTFQKLSLLMHVENSHEELIRNLKADAENKNNRETLNIVNKTPSSVGESQHGNSSSDDNLPLSQQIISFPTSTNKPKEKDLSDEMYKRNILDIKTISTKFLPRRCDLCGNIYNNLRALKTHVKTVHISEENYSVCPHCGKKFKRRANLRIHIKNAHIPKSSTETVKPTTAPKLKEKRFMCTECSYVCSTISTLTIHTNRHHTGEKPYKCDICYKSFIVRFDLKIHRYLHTGEKPYKCPFCLKGFRNTSQLVKHKRIHNNERPYKCKECGKSFTQSYNLTLHKRMHLKEKNLNCSICDKFFENKSLLNMHRITENHSDEVV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01237958;
90% Identity: iTF_01237958;
80% Identity: -