Pgri046781.1
Basic Information
- Insect
- Pollenia griseotomentosa
- Gene Symbol
- -
- Assembly
- GCA_963931875.1
- Location
- OZ007563.1:191290339-191292309[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00021 0.036 16.3 3.5 2 23 216 237 215 237 0.97 2 12 0.00023 0.038 16.2 1.6 1 23 243 266 243 266 0.94 3 12 0.0053 0.88 11.9 0.0 1 23 278 300 278 300 0.94 4 12 0.039 6.5 9.2 1.3 1 21 305 325 305 328 0.96 5 12 3e-06 0.0005 22.1 2.0 1 23 334 356 334 356 0.98 6 12 1.4e-05 0.0023 20.0 1.1 1 23 362 384 362 384 0.98 7 12 3.1e-06 0.00051 22.1 2.0 1 23 390 412 390 412 0.95 8 12 1.3e-05 0.0022 20.1 1.8 1 23 417 439 417 439 0.97 9 12 2.5e-05 0.0042 19.2 1.3 1 23 445 467 445 467 0.96 10 12 2.1e-05 0.0034 19.5 4.9 1 23 473 495 473 495 0.98 11 12 0.00039 0.064 15.5 0.3 1 23 501 523 501 523 0.97 12 12 0.00016 0.026 16.7 1.3 1 23 529 551 529 551 0.96
Sequence Information
- Coding Sequence
- atgACTACTATTCTATTTGGCCGTATATGTCGTACCTGTTTAAAGAAATCTTCCGATATGAAAAAATTGCGTGAGTTTATAACAGACGATCTACAAATTGAGGATATGCTTAATCGAACTATACCAAATTTTGATTTGGAAATGGATGACGTTCCGTTGCCGGTGGAGATATGTATGGACTGTGTAGGAAAATTGCAAGCATCATATGAGTTCTGgcaattgtgtttaaaaagcaataaggagttaaaaaatatattaaatgaacAGGAGTTGGAAATTGATGGAACGCTGGTAACAGTCTCAGAGGATGTAAATCAGATGGATATTTTAGAAGAAACTGATATTTTAATGGATAATTTTAAGAAAGAACCACAAGATGAGAACCCTTATGGTAGCCATGGTCATGTTAATGGCAATCAAAGCAAGGGTGCAGATATGAAAATAGAAGCTGTTAAGCTTGAAATTGACATCCAAAGTCAAGATCGATTTGAGGATAATAGCAGTTCGGAAGAATATTGGCCTCATGATGATAAAGAGGATAGTGATAGctatttctttgaaaaaatgTCAAAGAGCCCCATAAATATTTCGAAACCCAAAAGAAAATACCGGCGAAAAGCACCTCTTAAAAAATCAAGTAATAAAACTTGTTTGCATTGCAATAAGGTATTTGACAAAAAGAATCTTTTGACCAAACATTTGTCTGTTCATGACTCGGAGAATCAATTTGTATGCGATACTTGTAATTATCGCTTTTCTAGCGAAAGAAAACTCAAAACCCACATTAGCGGCAAACATACTGGAGTAGCAATAAGTTTAGCTGGTGGTCCATATCCCTGTCCAGACTGCCCCATGATATTTCAACAAACTCGAGCTTTGGCTGCCCATAGTGTCATGCATTCAGAAAGAGATTTCAAATGCGAAGTGTGTGATATGAATCTTAAAACAATGGCTGCCGTTACAAGACATATGAATTGTAAACATCCTGATGTTTTGCCCTATAAATGTCATATATGCGACAAATCATTTCCCgttgaaaatcatttaaatgatCATATCAACGAACATATGGGCTACAAGAAACATAAATGTGAAATGTGTGAAAAAAgTTTTCCTAATACAACTGCACTGAAGGACCATGTGCGCGTTCACACCGGTGAATCGCCATTTTTGTGTCCCCACTGTGGCAAATCATTTAAAACGGCTAATGTTTTGCGTCAACATTTACAAAGACATGGCgaaaaaaaattccattgtCCTGAATGTCCTATGAAGTTTTATGTCAAAGTAAATTTAACCAAACATATGTCTTCTCACACAAAGTTAAAACCTCATGTGTGTGATATTTGTGGTTCAGCTTTTACCAGACAAGACTCATTAAAAGCCCACAAATTTAAACATTCTGGAGAGAGGCCTTTCAAATGTGAAGATTGCAATATGAGctTTGTTTTTAAACGCCACTTAAAGCGACATAAAATTACTCATACTGGTGAAAAACCTCATATGTGCTCATTTTGTGATCGTGCTTATGCTGCTAGTGGAGATTTGGTTAAACATTTACGCATTCATGTGGGTGAAAAAACCTATTTTTGTGATCAGTGTCCGGAATCCTTCAAATATTCGCAGGATCTTAAAGACCATAAAAATCTTCactataaagaaaaattaaatttaatacaaaaaactgTTATAACTGTCGAAATACCACAAGAAGCTGTTGTAATACATACTGAAGATACTGTGGTTACACTGGAAGATCTGTATGAAGTAGAAAAAACTAGCgattaa
- Protein Sequence
- MTTILFGRICRTCLKKSSDMKKLREFITDDLQIEDMLNRTIPNFDLEMDDVPLPVEICMDCVGKLQASYEFWQLCLKSNKELKNILNEQELEIDGTLVTVSEDVNQMDILEETDILMDNFKKEPQDENPYGSHGHVNGNQSKGADMKIEAVKLEIDIQSQDRFEDNSSSEEYWPHDDKEDSDSYFFEKMSKSPINISKPKRKYRRKAPLKKSSNKTCLHCNKVFDKKNLLTKHLSVHDSENQFVCDTCNYRFSSERKLKTHISGKHTGVAISLAGGPYPCPDCPMIFQQTRALAAHSVMHSERDFKCEVCDMNLKTMAAVTRHMNCKHPDVLPYKCHICDKSFPVENHLNDHINEHMGYKKHKCEMCEKSFPNTTALKDHVRVHTGESPFLCPHCGKSFKTANVLRQHLQRHGEKKFHCPECPMKFYVKVNLTKHMSSHTKLKPHVCDICGSAFTRQDSLKAHKFKHSGERPFKCEDCNMSFVFKRHLKRHKITHTGEKPHMCSFCDRAYAASGDLVKHLRIHVGEKTYFCDQCPESFKYSQDLKDHKNLHYKEKLNLIQKTVITVEIPQEAVVIHTEDTVVTLEDLYEVEKTSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01235975;
- 90% Identity
- iTF_01237899;
- 80% Identity
- -