Pgri046198.1
Basic Information
- Insect
- Pollenia griseotomentosa
- Gene Symbol
- -
- Assembly
- GCA_963931875.1
- Location
- OZ007563.1:179403521-179411538[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.7e-05 0.0044 19.1 0.4 1 23 131 154 131 154 0.97 2 13 0.00015 0.026 16.8 1.6 2 23 160 182 159 182 0.97 3 13 7e-07 0.00012 24.1 4.0 1 23 191 214 191 214 0.98 4 13 6.8e-06 0.0011 21.0 5.0 2 23 459 480 459 480 0.98 5 13 5.3e-07 8.7e-05 24.5 3.2 1 23 486 509 486 509 0.96 6 13 0.00017 0.028 16.6 2.1 1 23 514 537 514 537 0.98 7 13 5.8e-05 0.0096 18.1 1.2 1 23 548 570 548 570 0.95 8 13 0.0014 0.23 13.7 2.6 1 23 575 598 575 598 0.96 9 13 3.1e-05 0.0052 18.9 0.8 1 23 604 626 604 626 0.96 10 13 0.00014 0.024 16.9 1.9 1 23 632 654 632 654 0.98 11 13 7.3e-07 0.00012 24.1 1.6 3 23 662 682 661 682 0.99 12 13 5.1e-07 8.4e-05 24.6 0.3 1 23 688 710 688 710 0.99 13 13 0.0009 0.15 14.3 0.1 1 23 715 738 715 738 0.98
Sequence Information
- Coding Sequence
- ATGGAAACAAATACACCCACAATAATCTGCAATAAAGATAAAATTTGCCGCATTTGCATGCAGGATGACGCTAATTTATTTCCTATATTTGATGAAATATTCTTTGGCAGCACTCTTACAATAGCTGAAATTATTTCAGAGTGTACAAAATATCCAGTGGCACATAATGACCAGTTACCATCTCAAGTATGTAATGCCTGTATGGAAGCAGCTCGCAACGCCCttcaatttaaaaagcaaaCAGAAGAAGCTTATTGCCAACTAAAGGCGTTGTATGATATAACTTGGGTTCCCAAACAGGAGAAGGGTGGCAATATAAGTTGTGGTGGCGGTATGAGAGCGAGTGGCCTCACCATAGAAAAGTATACACAAACTGAAAAAAGCACAGTATTTCAGTGTGAGATTTGCccgaaaaagttttttgtggaAAGTGAATTAAGACAACATCGTGCCACCATTCATATAAATGACGACAAAAAATGTCGTGTTTGTGGTGAGAAATTCAATCATTTGGGTCAATTAAAAGTCCATTTATCGACAGAGCATCCCAGCGAAGGTATACGTTGTGATTTTAAATGTAATATATGCTCAAGAGAATTCACCCGAAAAGATCATTTGAAAAGGCATTTAATGCGGGTTCACAAGGTTAAAGatgataaattaaatatATCTAAGGTGTCTCTTGAGGAACCTGAAATTGAAAATCCTAGTTTAAATAACTACAGCAGTCATTGGCCCGATTACCAAGAGGAAGAAGATAACGAACAAATTACAATAAAGAGGCAAACTCATGAAAATATTACTGCTACAAATCCATTTTCAAGTGAAGATGAAGGATTAGATCATCATAATTTCAATAATATAACTGCAGAAGATGTAAAACAATTTGTGGAAACAATAACCCACCCAGAAATATCTATTAAGGTCGAAAAGCCAGACTACAGTTATAATATGTCAGGCGataaaaatgaaaatcaaaataaaactacaaatgATTCATTTGAAGAAATGAAAACCCTTGAAACGCCACTAAAACCTGAAAAATCTGAGGATAAtctggaaattaaaaaaattgatgatGAAGATGATGAGGAAAACAATCTTAACAATTCGTTTCAAGATCATCAAAGCAGCAGTAATACAAGCGAAAATGATACAGATGAGGATTATGACCAAGACGATGAagatgacgatgatgatgttaattttaaatccGCTAAAAAATCTAATAAGTCTACATCAgcatctttaaaaaaagaaccGACTGACGGACAAATTGAAAATCCTACAAGTTCCAAGaccaaacataaaaataaatcttccACGGTAAAGCCACCCAGGCGACGTCATGGTTCTTCCAAAAATGAGGACAATCGTTGTAAAGAATGTAATCGCACTTTTACTCGCTACAATCATCTTCTACGCCATATGTTGACACACAGTGATGAGAAGCCACATGTTTGTAACTTTTGTGGCAAAGGGTTTTCACGTTCCGACCATTTACAAAAACATATACAGAGCATACATTGTGAAAAGAACTATAAATGTGATCAGTGTTCAAGTGCTTATGGCCGCAAAGATCATTTACAACGGCATATAGAAACGAGGCATAATAAAGATTCCTCAATACAAAAGCCCCAATTCGATTGTGATATGTGTGAGAAAAAGTTTACAACCAAAGCTTATTTGGCAAAACACAAACTGTTACATACCGATCGTCTGTATGCTTGTAAACATTGTTCGGAGACATTTCCCgaaaaagagcaaatgaaagaACACCAAAAGAACAAGCACACCCAACCGCGTAATTTTCTGTGCAATATTTGCGGTGACTCATTTCAACGTAATGAATATCTCAAAATTCATATGCGCCGGCATACTGGCGAGAAACCGTATAAATGTCgtttttgtgaaaaaggttTTCCTCGTAGCACAGATCTGAAAATGCACGAAAGATATCATATCGGCCACAAACCAAATCTATGTAATTTATGCGGGAAAGGTTTTCATCGTCCTTACAACCTTACCATACATATGCGCACACATACTGGTGAAAAGCCCTACAAATGCAATCAATGCCCCCAAGCGTTTGCTCAAAGTAACGATTTGAAAGCTCATATAAGACGACATACAGGAGAGCGGTTTCGTTGTGATATATGCAGTGCTGCATTTTTACAACGTTATGGCTTAAATGCTCACTTAAGGACAGTACATGGTATTATAGTTACTTCATTTACTGGACGCTTGCGTAAAACTGATCAGCCTATTGAAGGTGTTGAGCAAATTGATCAAGAGACACCAGCAGCGCCGCCACCGGAAAAAGCAGCCTCTGCACTAGAGCAATCCCAACCCTCGCTGCCTTCACCTCATATAGATAGTAATGTAACACCGCCACCATTGTATTTAGGTCATCAATTTGTTAATCCTACAGCTGCCGTTGTTGGCGCGAATACATCCACTTCTTCCATTGAAATTTTATCGTCAGCCGCACCAACATTGCTGCTGTCATTACCGCATTCATCAACGCAACAAATATAa
- Protein Sequence
- METNTPTIICNKDKICRICMQDDANLFPIFDEIFFGSTLTIAEIISECTKYPVAHNDQLPSQVCNACMEAARNALQFKKQTEEAYCQLKALYDITWVPKQEKGGNISCGGGMRASGLTIEKYTQTEKSTVFQCEICPKKFFVESELRQHRATIHINDDKKCRVCGEKFNHLGQLKVHLSTEHPSEGIRCDFKCNICSREFTRKDHLKRHLMRVHKVKDDKLNISKVSLEEPEIENPSLNNYSSHWPDYQEEEDNEQITIKRQTHENITATNPFSSEDEGLDHHNFNNITAEDVKQFVETITHPEISIKVEKPDYSYNMSGDKNENQNKTTNDSFEEMKTLETPLKPEKSEDNLEIKKIDDEDDEENNLNNSFQDHQSSSNTSENDTDEDYDQDDEDDDDDVNFKSAKKSNKSTSASLKKEPTDGQIENPTSSKTKHKNKSSTVKPPRRRHGSSKNEDNRCKECNRTFTRYNHLLRHMLTHSDEKPHVCNFCGKGFSRSDHLQKHIQSIHCEKNYKCDQCSSAYGRKDHLQRHIETRHNKDSSIQKPQFDCDMCEKKFTTKAYLAKHKLLHTDRLYACKHCSETFPEKEQMKEHQKNKHTQPRNFLCNICGDSFQRNEYLKIHMRRHTGEKPYKCRFCEKGFPRSTDLKMHERYHIGHKPNLCNLCGKGFHRPYNLTIHMRTHTGEKPYKCNQCPQAFAQSNDLKAHIRRHTGERFRCDICSAAFLQRYGLNAHLRTVHGIIVTSFTGRLRKTDQPIEGVEQIDQETPAAPPPEKAASALEQSQPSLPSPHIDSNVTPPPLYLGHQFVNPTAAVVGANTSTSSIEILSSAAPTLLLSLPHSSTQQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01261178;
- 90% Identity
- iTF_01237889; iTF_01235956;
- 80% Identity
- -