Pgri033908.1
Basic Information
- Insect
- Pollenia griseotomentosa
- Gene Symbol
- ttk
- Assembly
- GCA_963931875.1
- Location
- OZ007562.1:142224483-142235372[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.8e-19 1.6e-15 58.3 0.0 2 45 569 613 568 613 0.97 2 2 3.1 8.3e+03 -1.6 1.0 3 13 646 656 645 660 0.86
Sequence Information
- Coding Sequence
- ATGTCAgtacaacaattttgtttacgCTGGAATAATCATCAACCAAATTTCATTTCTGTCTGTTCGTCACTGCTACACAATGGCACATTGGTGGACGTTACACTGGCAGCAGAGGGTAGACAATTGCAGGctcataaaattgttttatcagCTTGCAGTTCATATTTCCAGACTCTTTTTACAACAAATCCATGTCAACATCCAATCGTTATATTAAAAGATGTTCAGTATGATGATCTTAAAACAATGGTTGACTTCATGTACTATGGGGAGGTAAATGTGTCGCAAGAGCAACTGCCGCATATATTAAAGACGGCAGAAATGCTTAAAATAAAAGGTCTCGCCGAAATGCCCACCGATCCTGCCAATCTAACAAAATCCGATAGTAAAACATCGAATGATGCTACGGAATTGGTCGGTGGTGGTGGTAATAATGGACAGTTAGGAGGTGGTAATAGTGGTGGTGGTAGCAGTGCAGGCGGTGGTAATAGCAGTAGTGGTGGTTTGGGTAGCAGTAGTGGCGGTGGCAGTGTTAGCGATTCAATATGGGGCAGCACCGAATCACaatttcaacaacaacaacagcagcaacaacagcagcaacaacatcaGCAGCAACAACATCAACAGCATCATCAACAattgcaacaacagcaacaacatcatcatcaacagcaacaacagcagcaacagtTACACACACAATTGCAAAATAGTCAAACACAAACctcacaacaacaacagcagcaacaacatcaTCAGCAACAGTTAAGACGCACACCGTCTCCATTAGGCGCTGGCGCCTCACCAGCCACCAGACGAAAACGTTTAAGAAAGTCCTCAAATAACgGATCCGGTGAACGTAATAACTCCGAAGATCATAATACATCCTTGGATGCTGCCACAGCTGGAGGTTTAACTCTATCCCAAATGAGTCAGATGTCATTTAGTGGTGCAGCTACAAATAGTGCTCTTAGTGGTTTAGCTGCCCACTCTTTGCACACAGCAAAATTACTTAAAGAAACCTCCAATAATGACTTGGAAACAAATCCTCAAGATTCCGATAGTTTAGACGATACACATGGTCACGTACATATgcaaattAAACCCGAAGTTGATATGAGTGGAGTACCACAGTCTATGCCGTTAGATATATCAGGACCCACAACGCCCTCAGAACATGATGCTCCCAATTCACAATCCGCACATTCAGGTTTACAATGGACGGTTGTTGAACCAAATTATTCACGCTTTTCGCTGTCATCATGTCCTACCAATTTAATTGGCAATAACAACAATCAAAacacaaataacaacaataacaacagctCGAGTAGTGATCAACAGCAGCAGCACCAACGCCAGCAACAAGAAGCCGTTGCTAGTcaacagcaacagcagcaacaacacttgcaacaactacaacaatatCAGCACCAACAAAACTCGGCCTATTCGCCACAAATCATAACGGTCAGTGGCTATACAAATGCAGCAGCAGCGGCTGTAGCAGCGGCCCAAAATTTATCACCGCCCTCGCCCAACGATGGCAATATGGTGCAATCAGTGTACAGCCAAGGACCAACGCCCACCCAGTCACCGGTGGGCAATGCATCGGGATCCGGCGGTGGCAGCAACATGTCCGGTGGCAATTCAGCAAACAATGCCAATATCAAGCGCAAGCGTTCTGTTAATCCACAAGGtgatgaaaattttataagGGCCCTGGAGGCAGTGCGTTCGGGAGGTATAGGTTTTTGTAAAGCGGCACGTCTTTATGGCGTAAACAATCGTACTTTATGGCTGGAATATAAGAAACGAGGTTATCCAGTGTCCAGGCCTAGTATAAAATCACGTGTGGTCAAGCAAGAACCGAATCTCTCACCTTCCCCTACTCCACCTGCCAATGCCACAGACGATACAAATGAGAACTATGATCAAATGGCAGCAGCGGTAGCGGCTGCACAAACAGCCGCTCTTAACATGCAAATACCACCGACTTCCGAGACACCAACACCCTCGCTGATGTGCACACCCCATCATGGTGGCACAGCCACAGGTGCTACAACACATCCTACCATGGGTGTTATGAGTTTCTTGGATACCCGCCACATGGACTTCCCAGCCAGTCTGCATTCAATGTCGCGACAGCGTTACATTGATGCCGGTGCTGGCGGTGGTGGCGGTGCGGGTACAATTAACGTTAATCCGGCAGCGGCAATGAATTTACAGAGTATTAATTTTAACTCAATATAG
- Protein Sequence
- MSVQQFCLRWNNHQPNFISVCSSLLHNGTLVDVTLAAEGRQLQAHKIVLSACSSYFQTLFTTNPCQHPIVILKDVQYDDLKTMVDFMYYGEVNVSQEQLPHILKTAEMLKIKGLAEMPTDPANLTKSDSKTSNDATELVGGGGNNGQLGGGNSGGGSSAGGGNSSSGGLGSSSGGGSVSDSIWGSTESQFQQQQQQQQQQQQHQQQQHQQHHQQLQQQQQHHHQQQQQQQQLHTQLQNSQTQTSQQQQQQQHHQQQLRRTPSPLGAGASPATRRKRLRKSSNNGSGERNNSEDHNTSLDAATAGGLTLSQMSQMSFSGAATNSALSGLAAHSLHTAKLLKETSNNDLETNPQDSDSLDDTHGHVHMQIKPEVDMSGVPQSMPLDISGPTTPSEHDAPNSQSAHSGLQWTVVEPNYSRFSLSSCPTNLIGNNNNQNTNNNNNNSSSSDQQQQHQRQQQEAVASQQQQQQQHLQQLQQYQHQQNSAYSPQIITVSGYTNAAAAAVAAAQNLSPPSPNDGNMVQSVYSQGPTPTQSPVGNASGSGGGSNMSGGNSANNANIKRKRSVNPQGDENFIRALEAVRSGGIGFCKAARLYGVNNRTLWLEYKKRGYPVSRPSIKSRVVKQEPNLSPSPTPPANATDDTNENYDQMAAAVAAAQTAALNMQIPPTSETPTPSLMCTPHHGGTATGATTHPTMGVMSFLDTRHMDFPASLHSMSRQRYIDAGAGGGGGAGTINVNPAAAMNLQSINFNSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01397556;
- 90% Identity
- iTF_01236810;
- 80% Identity
- iTF_01236810;