Basic Information

Insect: Pollenia griseotomentosa
Gene Symbol: -
Assembly: GCA_963931875.1
Location: OZ007562.1:142172223-142174091[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 5.7e-08 0.00015 23.2 0.0 11 40 406 434 400 438 0.84

2 4 3.7e-14 1e-10 42.9 0.0 5 44 453 492 450 493 0.93

3 4 0.028 75 4.9 0.0 27 38 522 533 518 539 0.88

4 4 1.5e-14 4e-11 44.2 0.0 4 41 561 598 561 600 0.92

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	5.7e-08	0.00015	23.2	11	40	406	434	400	438	0.84
2	4	3.7e-14	1e-10	42.9	5	44	453	492	450	493	0.93
3	4	0.028	75	4.9	27	38	522	533	518	539	0.88
4	4	1.5e-14	4e-11	44.2	4	41	561	598	561	600	0.92

Sequence Information

Coding Sequence: atgaaTCATTTAAAATGGATGGGCCATTCGGCCACAATAttagatatacataaaaatctACGAGCAGATTTAAAGAGTTGTGAAGTGACGTTGGTGGCCAAGGGACATTGTGTTAAGGCTCATCGTTTTGTTTTATCATCGTGCAGTGACCTGCTACGGTGCCTGCTTGTCGATGTGCCGATTGGGCAGGAATGTTGTGTAATGGTACCCGATATAAAGGGTCACTTGTTGGATAATGTATTGGCATTTATATACTTAGGTGAATGCTCCTTATCATCCACAAATTTATCCGAGTTTTTAGAAGCCATTAATATATTGGGCATTAAAAGTGCCATTAGTTTCGAATGCAATACAAATGCTTTGCAGACAGCTCAAAGTAGTAGTCAAAGCACTATTTCTTTAGACAGCAACACAACCATGGCGCCTGTGAGTAATAATACCTTAGCCAGTGCGCAAGTGACTGTTGGGGGTTCTGACGATGGATTGCATCAGGAAGAAATAATTGAAACGCAGAGTGTAATTCATAATGAAGCTCATACAGTGGCTGCAAGTGATGCAAATAATTCGGCTACAAATAGAGAACTTGATTTTTTAGATGTATATCACGAACCTGAACATAAAATAACATATTCAATAGAACATGTTCCTGGGTCTACAGCTGGAAATGAGTTTATTTTAACTGAAAACTCTGGCACTTTCACTTTAACACACAGTGGTAAATTAGAACCAACTACATCCCCGGCTGAGTCCTCTAATATGGAAATTACAGAGGACGATGGCTGTGATACACATATAATAGAGGAATACAGTAGTGGCGACGAGCCTTTAATACAAATAGGAGAAACTGTGCAAGAACCGCATAGTTTAACAGTGGTTCAAACAGCACAGCATCATCCACAACAACAGCACACAACACAAACGCAAAATCCATCTACGACAGCAACTACAACTTCTATTATACAAGTTAAACCAAAAATGAAAACGCTCAAACTAAAACATCCGCAAGCATCACACAAGTTAATTACAAAAATGGAACAACTTTCCGAGGATACAGCAAGCGATGATCCCATTTCGATACTACAAAGCTCAAATGAAAGTTTTACTTTGCTTAAAGATGCCTCAACGATGTCCACAAATAACACTAGTCATGACGAGTCAACAGATTTTTCTATGAATAACTCGTGTACATCGGCCGCCGAATTGGCCTATCAAGCTATGGTCACTGAGGGTATGTCTTTACCAAAGGCTGCCGATATATTTAATGTTTCCAAAGCAGAACTTTGGCGACGGGTGCGTGGTGCTGAAGTTGAACAGTTAAATAAATCGGTTAAATTGGATCCTGATAAGATTGATGTTTTAGAATTGGCCAGTAAGGCGGTAATAAACGAGGGCTTGTCTTTACAAAAGGCCGCCATACGCTATGACATCTCTAAAACCGTTCTGTGGCGTCGGGTACGCAAACATCCACAGTACATGAAGACAGCACGTGAAAATCCAATTATAACAAAAGCCTATGAGCGCCTAAAATCCGGAGAATCGCTTAAGAGCATATCACAAGACTTGGACATACCCATGTCAACTTTGCATCGGCATAAGGTTCGTCTCTCACAAACGGGGCAATTGCCTGATTTTGTAACATGCAAAAAACGTGATAGCATGTCCAAAGAtgatttaaaattgaaactttCGAAAGCAGTTCATGCCTGCGTACACGAAGGAATGTCACAAAATCATGCTGctaatttattccaaatttcgaAGAGTACATTGTGGCGACATCTGCAAAAACGTGTGGCGGAAGCTGAGGCAGCTGAGACTGAATCTATGGGCGATGAAGATGAAATTAAGCAAGAAGTTATACTTTCATAA
Protein Sequence: MNHLKWMGHSATILDIHKNLRADLKSCEVTLVAKGHCVKAHRFVLSSCSDLLRCLLVDVPIGQECCVMVPDIKGHLLDNVLAFIYLGECSLSSTNLSEFLEAINILGIKSAISFECNTNALQTAQSSSQSTISLDSNTTMAPVSNNTLASAQVTVGGSDDGLHQEEIIETQSVIHNEAHTVAASDANNSATNRELDFLDVYHEPEHKITYSIEHVPGSTAGNEFILTENSGTFTLTHSGKLEPTTSPAESSNMEITEDDGCDTHIIEEYSSGDEPLIQIGETVQEPHSLTVVQTAQHHPQQQHTTQTQNPSTTATTTSIIQVKPKMKTLKLKHPQASHKLITKMEQLSEDTASDDPISILQSSNESFTLLKDASTMSTNNTSHDESTDFSMNNSCTSAAELAYQAMVTEGMSLPKAADIFNVSKAELWRRVRGAEVEQLNKSVKLDPDKIDVLELASKAVINEGLSLQKAAIRYDISKTVLWRRVRKHPQYMKTARENPIITKAYERLKSGESLKSISQDLDIPMSTLHRHKVRLSQTGQLPDFVTCKKRDSMSKDDLKLKLSKAVHACVHEGMSQNHAANLFQISKSTLWRHLQKRVAEAEAAETESMGDEDEIKQEVILS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00199788;
90% Identity: iTF_01237802;
80% Identity: iTF_01236845;