Pame021713.1
Basic Information
- Insect
- Pollenia amentaria
- Gene Symbol
- nfxl1
- Assembly
- GCA_943735935.1
- Location
- CALSEV010000357.1:2494168-2506301[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 2 4.4e+04 -8.1 6.4 15 19 157 161 156 161 0.82 2 21 0.088 1.9e+03 0.2 0.4 4 10 192 198 191 198 0.96 3 21 7.7e-08 0.0017 19.6 14.7 1 18 206 222 206 223 0.98 4 21 1.5 3.2e+04 -3.7 2.3 3 7 250 254 249 256 0.76 5 21 0.00032 7 8.0 13.8 3 19 261 278 259 278 0.91 6 21 1.3 2.8e+04 -3.5 0.7 6 10 303 307 302 307 0.85 7 21 1.6e-08 0.00034 21.8 12.7 1 19 313 331 313 331 0.99 8 21 0.9 2e+04 -3.0 0.5 1 7 356 361 355 363 0.49 9 21 3.2e-08 0.0007 20.8 10.9 1 18 366 383 366 384 0.96 10 21 0.31 6.8e+03 -1.5 0.4 1 5 393 397 393 402 0.75 11 21 2 4.4e+04 -5.0 2.3 5 10 407 412 407 412 0.91 12 21 0.00017 3.8 8.9 16.9 1 18 418 435 418 436 0.98 13 21 1.6e-10 3.5e-06 28.2 14.5 1 19 445 463 445 463 0.98 14 21 0.097 2.1e+03 0.1 9.8 9 18 508 517 499 518 0.91 15 21 0.0076 1.7e+02 3.6 5.3 4 11 532 539 521 540 0.87 16 21 0.33 7.2e+03 -1.6 0.9 6 10 599 603 598 603 0.90 17 21 0.00014 3.2 9.1 5.5 1 12 609 620 609 620 0.96 18 21 2 4.4e+04 -4.6 2.2 15 19 633 637 633 637 0.84 19 21 0.00099 22 6.4 14.2 3 18 649 664 648 665 0.94 20 21 2 4.4e+04 -5.5 2.1 9 13 671 675 670 675 0.72 21 21 5.9e-06 0.13 13.6 12.5 1 18 716 735 716 736 0.91
Sequence Information
- Coding Sequence
- ATGCCGCCAACTAAGAACAAACAACAAAGCGCTACCAAAAACACAACACAGAAGTTCAATGAAACTCATGCAAGAAACATAGAAGTGGCGAAAAAACTTGTTGAAAATTATGTGTCTTCTTCTGAGGATGAGGATGAATTAGATGAAAAAACGATTATAGAATCGTTGTATCAGCATTATAATACACGCAAGGAAGATGAACATATTTTGGCCAAAACAGCCGGCTTTTTAGAAAATGTTTTGCAAACGGGAGCAGCTACGTGTCTTATTTGTATTGGCAGTATAAAACGTTCAAATCCGATTTGGTCCTGCAAATATTGTTATTGCTTTTTCCATTTGAATTGCATACGAAGATGGGCTAATGATAGTATGGCCCAGGCAAAGGCCCAAACACAAAACGAACAAGGTTACTACAATCATATGGGAGAATATGTGCCACCCAAAAAACTCAAAGCGTTAAACTGGTGTTGTCCTCAGTGTAGGAGAGAATTTCGACCAGAGGAAAGACCAACGGATTATGAGTGTTTTTGTGGCAAAGAAATAAATCCGACATCGCAACCCTGGTTAGTTCCCCATTCATGCGGTGAACTGTGTGGCAAAGCTCTGCAACCAAACTGCGGACACAAATGCACATTATTATGCCATCCCGGACCATGTTCACCTTGTGCTCAATATGCCACAACTTCCTGCAAATGTGGAAAATCTCCTCCAAAATCGATACGCTGCGCCGAAAAGTTATGGGAGTGCCACCATAACTGTGAATTACTACTGCCTTGCAAGGAACATGTTTGTAAAAATTTTTGTCATAAACCTGGACAATGTCCACCTTGTCAACAGACAAGTATGCAACCATGTGAATGTGGCATGGAGACTGCAAAACGGCAATGCTGTGAACTGAAATGGCATTGTAGTAAACCTTGTGGAAAACTGTATACATGTGGCTTACACACTTGTAAAAAAGTTTGCCATTCGGGCGTATGTGGAGATTGTCCTTTAAGTTTGCCTCGCTCCTGTCCATGTGGTAAAACGAAAAAAGTTGGACCCTGTTCGGAGTTAATTGATACTTGCGGAGATACTTGCCAAAAGCTATTAGCTTGTGGCTTACATACTTGTACACAACGATGTCATAAGGGAAATTGTAATTTGTGTTTAATTATAACAAAAAAGAAATGCCGTTGTGGTATGCACGAAAAAGAACTACCTTGCTCCAAGGAATTTACATGTGAAACGAAATGTAAACAAATTCGAGATTGTGGCAAGCACCCTTGCAATCGAAAGTGCTGCGATAAAAATTGCCCACCATGTGATAAAGTGTGCGGCAAACCACTATCTTGTGGTAAACATAAATGTCAATCGATTTGTCACAAGGGACCTTGTTATCCGTGTCAACAAAAATCCCAAATCAATTGTCGCTGTGGTAAAACTAAAAAGGCGGTACCCTGCGGAAGAGAGCGTACAGCACGTGTAGTTTGTTTGGAACCATGTCGTATTCCCTCAAAATGTCATCATGACAATAAACACCGATGTCATAAAAATGAATGTCCACCTTGTGCTCAACCCTGCGGTTTACCAAATGACACCACTAAGTGTGACCATAAATGTACAGCGAAATGTCATGCATCAATTAAGGTGGCTAAAAAACCAAATCCTAATACTACAAGTATATGGGAGCCTACTAAACAGTTTGAATTCAAACAACTGCCTCACCCACGTTGTGAACAAAAAGTAAGCGTTACATGTATAGGCGGTCATGAAATTGCCGATTGGCCCTGTTGGAATTCCAAACCTACATCCTGTCAACGTTTGTGTAATCGTTCCTTGCGCTGTGGCAATCACATCTGCACTTTAGTCTGCCATACTGTGTTGGATTTAAAAGACATGAAGGAACAACCTGGATGTGCTCCTTGTCAAGAGGGCTGTAAAATTGCTCGACCCGAAGGATGTATCCATAATTGTCCTAAACCCTGTCATTTACCACCCTGTTATCCTTGCAATGCTGCTATTAAAACTAAATGCCATTGTGGATTAATGCCTATCGTTTACAAATGCAGCGAATATTACAACACTGAAACCAAAGAAAGCGAACTTTTGGAAACACAAGAAAATCTTAAAAGCTGTGGAAACAGATGTTTAAAAAACTACCCATGTGGTCATCGCTGCGTAGCCCAATGTCATTCTGGACCATGTCCCTATCCGGAATCGTGTCGCAAAAAATTACGCATCTATTGTGATTGTAAACGCTTAAAATCCGAAGTTTCCTGCGACAAACATCGCGCCGGACTTCAACAATTACAATGTGATGATAATTGTGTAAAAACTAAAAAAACGTTGGACCAAGCACGACAAAAGGAAGAAGAATTACGACGAAAACATGAGGAGGAACGCAATCGCTTGGAAGTTGAACAATTTGAAAAGAAATTTAGCAAGCGCAAACCTAAAGAACGTAAAACTTTAGAAGTGAAACAAAAGACTTCCATTAACTGGAAACTAATTGGACTATACGCATGTATTGCAGCAGCTGTGTTGTTGGCGGTTGCTTTAGCCTTTTTCGAGGATCAATAA
- Protein Sequence
- MPPTKNKQQSATKNTTQKFNETHARNIEVAKKLVENYVSSSEDEDELDEKTIIESLYQHYNTRKEDEHILAKTAGFLENVLQTGAATCLICIGSIKRSNPIWSCKYCYCFFHLNCIRRWANDSMAQAKAQTQNEQGYYNHMGEYVPPKKLKALNWCCPQCRREFRPEERPTDYECFCGKEINPTSQPWLVPHSCGELCGKALQPNCGHKCTLLCHPGPCSPCAQYATTSCKCGKSPPKSIRCAEKLWECHHNCELLLPCKEHVCKNFCHKPGQCPPCQQTSMQPCECGMETAKRQCCELKWHCSKPCGKLYTCGLHTCKKVCHSGVCGDCPLSLPRSCPCGKTKKVGPCSELIDTCGDTCQKLLACGLHTCTQRCHKGNCNLCLIITKKKCRCGMHEKELPCSKEFTCETKCKQIRDCGKHPCNRKCCDKNCPPCDKVCGKPLSCGKHKCQSICHKGPCYPCQQKSQINCRCGKTKKAVPCGRERTARVVCLEPCRIPSKCHHDNKHRCHKNECPPCAQPCGLPNDTTKCDHKCTAKCHASIKVAKKPNPNTTSIWEPTKQFEFKQLPHPRCEQKVSVTCIGGHEIADWPCWNSKPTSCQRLCNRSLRCGNHICTLVCHTVLDLKDMKEQPGCAPCQEGCKIARPEGCIHNCPKPCHLPPCYPCNAAIKTKCHCGLMPIVYKCSEYYNTETKESELLETQENLKSCGNRCLKNYPCGHRCVAQCHSGPCPYPESCRKKLRIYCDCKRLKSEVSCDKHRAGLQQLQCDDNCVKTKKTLDQARQKEEELRRKHEEERNRLEVEQFEKKFSKRKPKERKTLEVKQKTSINWKLIGLYACIAAAVLLAVALAFFEDQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01313435;
- 90% Identity
- -
- 80% Identity
- -