Pame034780.1
Basic Information
- Insect
- Pollenia amentaria
- Gene Symbol
- -
- Assembly
- GCA_943735935.1
- Location
- CALSEV010000738.1:114492-145637[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.012 1.3 10.8 2.0 1 23 306 329 306 329 0.95 2 15 0.0043 0.49 12.2 0.9 2 23 390 411 389 411 0.96 3 15 0.012 1.4 10.8 1.1 1 23 488 511 488 511 0.96 4 15 1.6 1.8e+02 4.1 2.3 1 23 593 616 593 616 0.93 5 15 3.9 4.4e+02 2.9 5.2 1 23 622 645 622 645 0.96 6 15 0.06 6.8 8.6 2.5 2 23 676 697 675 697 0.96 7 15 0.018 2 10.2 1.8 1 23 774 797 774 797 0.97 8 15 1.7 1.9e+02 4.0 0.5 2 22 805 825 804 825 0.92 9 15 0.14 16 7.4 2.2 3 20 904 921 902 924 0.92 10 15 0.12 13 7.7 2.2 1 23 1005 1028 1005 1028 0.94 11 15 0.00032 0.036 15.7 1.9 1 22 1035 1056 1035 1056 0.96 12 15 0.15 17 7.4 0.1 2 23 1068 1090 1067 1090 0.90 13 15 0.057 6.5 8.7 1.2 3 23 1151 1171 1150 1171 0.94 14 15 0.018 2 10.3 0.1 2 19 1198 1215 1197 1218 0.93 15 15 7.5e-05 0.0085 17.7 5.1 1 23 1268 1291 1268 1291 0.97
Sequence Information
- Coding Sequence
- ATGGACACGACCGTTAAAAATATATGTTTTATAAATGGAGTTCAGTATAAATGTCGAACATGCTTTGATCCGGGACTACAAATATACCCACTCTCAGAAGCGTGCAAAAATACACAGACCTGGCGTGATTTATTAAATGAAGTTGGTCAATTGAAGACGGACGAAAACGAGTTACTTCCAAAGACTATTTGCTGCAAATGCTTAAATAAACTTATTAGTTTCTTCGATTTTATACTTCAGATTCAAAATGTGAATAAAAAATATTTTGAATTACTTGCAAATGAGAATGTTGAATTACAGGCTGGAGCTGACAGTTTCGCAGATTCCTTGGCAGGAACTGCTACTGTTTTGCCAATGCAACAGAATGTGATGGAATTCAAATTTGAAGATGAAATGGTTGTGCCATATGATATTGTTTTGAGTAATAGCAGTGAAATGCAACAAGGTCATGAATATAATCTTGAAAATAAAGATGATCATGATCCTTCTAATGAATATATAAAATTATCTACAGAGGAGTTGGAAAAAAACAAACGATTTTTAAATGATGAAATCAATGATACTGGTAACGGAAACGAATCCAGCCCATCATCGTCGGATGAAAGTGACTATGGTTTCCAAAAAATCAAAGAGAATGATAAAGCAAATAGCAGCGGCGTCAACCCATCATCGTCGGATGAAAGTGACTATGGTTTCCAAAAAATCAAAGAGAATGATAAAGCAAATAGCAGCGGCGTCAATGAACAAATAGATTGGGAAAAATATATAAATACTCAAATCGAAAAAGTCAACAATGGTCCATCTCGTAGAAAAGAAAACTGCTTTTTATCATCCAGTGAAAGTGACGATGAACTGCCCACTACCAGTCAATTGATTAAAATCCCTAAATATGAAATACAACAAGTTGGTAATCGTTTTCTTTGTCCGGTATGTAAGAAAACATTTGCTTTAAGAAGAAATTGTGGTCGCCACATCAGGACGGTACATTGCAAACACACCAATACATTTGCTTGTGGATTTTGTGGACATCATTCTACATGTAAGGAGTATTTGAGCGCGCATGTTAAGCGGGCGCATCCTGGCGAATCGATACATACGAATGCTAAGCAGTTAGTTTTGTTATTTGGAGACCGTTTATACAGCAAACCTGTCGTTTGGCGCCTTGTGAAATGTATGTTGTGTGACACAATATTTTCAACGACAAAAAAACTGCGTCAACATTTAGCAAATCACAGTGATATAAACACACTTCATTGTTTGGAATTAAGAAGTAACATTGTCAAGCATTGGTTTCCAAGTATGATTGATTTAAATAGTATCAAGGAAATAATTTGTAAAGATATTCTCGAGAAAGATTGGTGTAAATACTACGTAGTATTAAACGAATATTCGTACGAAGTTTCTATTACTGATACAGAAGTAGAAGACTTGGAAGATGAATCTGTAGAGCGTGTAAGCAAATACAACTGCGAAATGTGTGCTGAAAAGTTCTCTTACAAATATCAAGTTTTTTCTCATTTAAAAGAAGATCATGCCGAAAACGACATTCCTTTAAGATGCAGGGAATGCAAATTGAAATTTATATCAATCAAAATCCCAACATCGTCGGCTGAAAATGACTATGGCTTCCAAAAAATAACAGAAAATGGTAATGAAAATAGCAGCGGCGTCAACTCCTCATCATCCAGTGAAAGTGACGATGAACTGCCCACTACCAGCCAATCAGTCGTTAATAATCCTCCAGATGATTATGATATCAAGAAAGTTGGTAATCGTTTTCTTTGTCCGGTATGTAATAACACATATGCTTTACGAAAAAATTGTCGTCGCCACATCTTTATGATGCATGGCAAACAAAATACATTTGCTTGTGCATTTTGTGGACATCATTTTACATGTAAGGAGTTTTTGAGTGGACATATTAGGCGCGCGCACCCAGGCGAATCGATGCATACAAATGCTAAGCAGTTAGTTTTGTTTTTTGGAGACCGTTTATACAGCATGCCTGCCGCTTGGCGCCTTGTGAAATGTATGTTGTGTCACGCAATATTTTCATCTACAAAAAAACTGCGTCAACATTTATCTAATCACAGCGAAACGTATACCCTTCATAGTTTGGAATTAAGGAGTAGCATTGTCAAGCGTTGGTTTCCAAATATGATTGACATAATTCAAGTCAAGGAAAAAATTTGTGCAGATATTCTCCAGAAAGATTGGTATAAATACTACACAGTATTAAACGAATACTCGTATGAAGTGTCTATTAGTGATACAGAAGTAGAAGACTTGGAAGATAAAACTTTAGAGCGTGCGAGGAAATACAATTGTGAACTGTGTGCTATGAAGTTTTCTTACAAATATCAAGTTTTTTCCCATTTAAAAAAAGATCATGACGAACACGACATTCTTTTAAGATGCAGGGAATGCAAATTGCAATTTATATCAATCAAAATGTATGAACAACACAAACAAACTTATTGCGAAAATAAATACAAAGGCTTACCCTGTATACATTGCCCAGGGAAATTTATGTGGCCTGAAAGTATGAAAAATCATAATTGTCCCACAAAAATAACGGTATATGATGCCACTGAAGATCATCCCATATTCACAAGTGATGGTGAGGTTGAGAAAAGTAATAAGTATCAAAAAGATGATTTAGAGACTGATAATGATAACGGAATTGTACTATCAAAAAATGTAATATGTTGTGGTCTTTGTGAGTTAACCTTTGAAAAGTTGCGACATTTACGGCAACACATGCCTCTGCATGCTGACGGTAAAACTGGCATTGACTTTGAAAGCTGTATTTATGTAAAACAATTAGGACGTACAGCAGTAATTAATTACACATTTCTGAAGCAGCAGATCAAAAATGCCTATATTAAACGTCAAATTAGTTGTTTTTACCAAGCCATCGACAAGTTCGGCAATGAAATGGATATTTCAGATTCCGATTCAGATTCTGATAGTAATATAGAGGACAATGATGGTGAAAATGTTAAGAAAGCTTATACATGCGATGTTTGTAAAGATGTGTATCAAAGACGAAAACTTCTAATTAAACATCAACATGATCAACACAACAATGTGACATTGCCGTTCACCTGTAAGGATTGTCAACAGCAATTTGTAAGTAATCATTTGTTGCAACAACATTTAAAAACAATTTGTGGGAATGAACACCGCCGAAAAGCTCAACCATGTGACATCTGTAATAAACGTTTTATATGGCCAAATAATATGTTCGTACACAAGGAAATTCAGCATTATACAATGGAACAAAATTCTACTGGACTTTCTATGAATATTAAAAACCCGTTACGAGATAAAAAAGAACTCGAACGGCCTAAAAATTACAACTCAGCAACAGCTGGAAGTGCTACATCTTTCTATCCGACAACTGCAATACTAATAAAATCTTCTTCTGCTGATATTCAACTTCGTTATTGTTTTCTGTGTCCAAAAACATTCTTTGGCATTGAACATCTCAATGCCCATTTAACTTTTCATAGTTTGATACCATCTGATATTAAGATATTTGAAGCTATAATACATTCTACCTGGTGGCCAAATGGAAAAAAAGTAATCAAGTGTAAAATATGTGGCCTAATATTTGTGACTATGGCCAAACTAAAAGAACACTTCTCACTTAAAAACATGCGGACAATTTGTACTATGGAAAATCATGCACTTAAAAATTACTCTATTACTAACCAAAATGGATTCGAGTTGCACTTGGAACTAGATTCTGAATCAGAAGTTGAAGATAGTGAAGAAAATACAATTTCTTTTAATTCCTACAACTGTTGCATCTGCAACAAAAGCTTTAAACGAAAATATGAAATAACGCAACATCAGAGATCAATGCACAACTACGAATTGTTGGAACTTAAATGCGAACATTGTATTTTCAAAACAGTCTCACAGGTATTTACATGTTTTTTTTAA
- Protein Sequence
- MDTTVKNICFINGVQYKCRTCFDPGLQIYPLSEACKNTQTWRDLLNEVGQLKTDENELLPKTICCKCLNKLISFFDFILQIQNVNKKYFELLANENVELQAGADSFADSLAGTATVLPMQQNVMEFKFEDEMVVPYDIVLSNSSEMQQGHEYNLENKDDHDPSNEYIKLSTEELEKNKRFLNDEINDTGNGNESSPSSSDESDYGFQKIKENDKANSSGVNPSSSDESDYGFQKIKENDKANSSGVNEQIDWEKYINTQIEKVNNGPSRRKENCFLSSSESDDELPTTSQLIKIPKYEIQQVGNRFLCPVCKKTFALRRNCGRHIRTVHCKHTNTFACGFCGHHSTCKEYLSAHVKRAHPGESIHTNAKQLVLLFGDRLYSKPVVWRLVKCMLCDTIFSTTKKLRQHLANHSDINTLHCLELRSNIVKHWFPSMIDLNSIKEIICKDILEKDWCKYYVVLNEYSYEVSITDTEVEDLEDESVERVSKYNCEMCAEKFSYKYQVFSHLKEDHAENDIPLRCRECKLKFISIKIPTSSAENDYGFQKITENGNENSSGVNSSSSSESDDELPTTSQSVVNNPPDDYDIKKVGNRFLCPVCNNTYALRKNCRRHIFMMHGKQNTFACAFCGHHFTCKEFLSGHIRRAHPGESMHTNAKQLVLFFGDRLYSMPAAWRLVKCMLCHAIFSSTKKLRQHLSNHSETYTLHSLELRSSIVKRWFPNMIDIIQVKEKICADILQKDWYKYYTVLNEYSYEVSISDTEVEDLEDKTLERARKYNCELCAMKFSYKYQVFSHLKKDHDEHDILLRCRECKLQFISIKMYEQHKQTYCENKYKGLPCIHCPGKFMWPESMKNHNCPTKITVYDATEDHPIFTSDGEVEKSNKYQKDDLETDNDNGIVLSKNVICCGLCELTFEKLRHLRQHMPLHADGKTGIDFESCIYVKQLGRTAVINYTFLKQQIKNAYIKRQISCFYQAIDKFGNEMDISDSDSDSDSNIEDNDGENVKKAYTCDVCKDVYQRRKLLIKHQHDQHNNVTLPFTCKDCQQQFVSNHLLQQHLKTICGNEHRRKAQPCDICNKRFIWPNNMFVHKEIQHYTMEQNSTGLSMNIKNPLRDKKELERPKNYNSATAGSATSFYPTTAILIKSSSADIQLRYCFLCPKTFFGIEHLNAHLTFHSLIPSDIKIFEAIIHSTWWPNGKKVIKCKICGLIFVTMAKLKEHFSLKNMRTICTMENHALKNYSITNQNGFELHLELDSESEVEDSEENTISFNSYNCCICNKSFKRKYEITQHQRSMHNYELLELKCEHCIFKTVSQVFTCFF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -