Pame007330.1
Basic Information
- Insect
- Pollenia amentaria
- Gene Symbol
- -
- Assembly
- GCA_943735935.1
- Location
- CALSEV010000102.1:763274-780726[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 7.8 8.9e+02 1.9 1.5 2 23 1646 1670 1645 1670 0.82 2 7 0.0036 0.41 12.4 3.5 1 23 1676 1699 1676 1699 0.95 3 7 0.96 1.1e+02 4.8 0.5 1 23 1703 1726 1703 1726 0.85 4 7 0.098 11 7.9 3.3 1 23 1976 1999 1976 1999 0.92 5 7 5.2e-05 0.0059 18.2 0.6 2 23 2028 2049 2027 2049 0.97 6 7 3.8e-05 0.0043 18.7 0.2 1 23 2056 2079 2056 2079 0.97 7 7 0.017 1.9 10.4 0.0 2 23 2086 2107 2085 2107 0.91
Sequence Information
- Coding Sequence
- ATGATACATAAATTCCGGCGGAAATGTCTTAAAGTTCAAACACAATTGCGAGCGCTCTACGAGGAACAACAGAAATTCTATGAAAGTCGACAGCAGCAACAAAAGGAAAAAAACGTAACAGTAAAGGAGGATGTAACAATAGAAGACGACGAAGAAGAAACGACATCAACACCAGTTTCCACAGTACCAGTAGTAGAAGCACAACCACAACTACAGCCAACAAATCTAGTAGTTGAAATTGTTAAGCCGCCTGTAATGCATAAAGTCAATGATTTAGTTAACGATAACTATAGTGAAACGCAACAAGCCATCGTCGTAGACAATACAAATACAAAATCATCGGTTCCCTTTGAAGCAAATACAGGGAATACCAATGATTTTATAGCACCAACAATAAAAACAAAAACATTGCTGGACAATGTTGAAACAATGCCACAAAAAATCGAAACAAAAACAGAAGCAAATGAACCTACGCCAACATCATCAGCACCAGGAACAGTAACAGCCACAGAAACAGCGTTCATCGATAAAACATTTGAAACTCATGAACATGAACATAGCACCGGTACAACACAGCAGTTAAGGCTGCTTAAGGATGAAAAGAAACCGCTGCTTAAGCCAGCAGTGTTGAATTCTCAAAGTTTGCCGCCCTTAACCTTACAACAGCCCTTGGAACAAATATGTGATAATGATGCCTTAGAAGTGCCAACAAATCCAAGTAAAAAACCATGTTTAGATCAAGAAGCATTGCTAGAAACCCATATAATATTTAAATCCTCTACGAAAAAAGAGGATTTAAAATTATGTCTCAGAAATGAGCAGACCATGTTGGAAAATCATGACAATTCGTCTGGAAATTTGTCACCTTGTGCCGAAGGAATTAAAGCAAATAAAACTTTCCAATTAAGTAAACAAGAGACAAAACATTTTTCAAAGGACAGTGCTTTAAGTAAAGCTAACTCCGAAAGTTTATTTATAACCAAAGCCGCCTTAAAATCCTACACAATTTCGCCTGCTACAAGTGAATGTGAAAATCGTGATCATCATCAAAAGCCAATTACAAATTCAGTAGCTGCTGAAGAAGCAAAAAATAACAACGATAATAATAACAATGACCACAAAAACATTTATGATAATCAAGAAGAACTAAACGATAATACTTGCAGTTCATCCACAACTGCAACAACCCCCTCCTCATCACCCAGCATTTTCAGAACTCCAAAACGTAGAAATATTTGTAAACGCAAAATGATTAAATATTCCAACCAAAATAGCAGACCAGGTCATTGTTATAAATCAAATGCAAAAACAGCAAAAATTATTGCAACAACAACAACAGCAGCAAAAAAGGCAAGGACGATTTTAAACTATGGTGGTGAATTGTACGTAAAGAGAAAACCAAGATCACGGCAAAACAAACATAAATTAAAACGTCTTACTAATGCGACAACAACAAAAACAAAAACATCGTCAATAAATTCTCCTTCCATAGATTTAAGAAAAAAACTTGATCATAAAGGAGTTAAAATAAACCATAAAAAATCATCAGACGAAATGTCATCTACTGTCTCAACAACATCATCTAACTCGCCAACATCATCGTGTTCGCCGTCATCATCAGCCATGTCGTCTACGACGTCATCGCCTTTAAGGGCAATAGCACCTGCAGTTACAGATCTAGTTAGAAACAACAGAAATGCCCAGGAAAATATGACCAAAACGGGCTGCTCATCATCATCATCATCAGCAGCAGCAAGAGCAGACATATTGTCTTCCAACATGACTTGTATCATGTGGAAGACTAAAGCAGCAATGAAAGCAAATGCCAATGACATGACTGCGAATGCGAATGTGTTAGCTGATAATGTTGATGATGGTGAACCTACTAGCAATATACCAGAAATAACATCACCATATAAAGCATCAACAACAACCGGCTCAACATCATTTCTGTTGTCTTCTGGTTTGGCTGTAGACAAAAGTTCAAAGACCCTTAATGAAAATCAGAGCATCAGCACCAGCACCAGCAAAAGTTGTAGTAGTAGCAATAATAACAATATTTTAATGGAGGAATATTGTTTAACTAATAAGGTAATGTCTTCTTTGGCTGGTAATCAAGTCAAGGACATTGAAGATGAAAGCGAAAAGCAAAAAACTCCAAAATGCAATTTATGGCCGGAAGAGGCAGACCAAAACCAAATTGAGGCCAACACACCAAAAGAGAAACAAAATGCAATAAAATTAGCGAATAAAAAGGAATTTATGTACATTGAAGGGTATAAAGAACAAAATATTGAAGAAGACAAGAAAGAAGAACAAAAACCCATAATCCTAACGCCTCCTGCCAAAATTGGTAGTATGAAATTGATAATACAACGTAAACGTGGAGCACGATTTAAATGTCGCCGCAAAGAGGATGATGATGAAGAAACCAACACTAAGCACGATAATCATGAGCCCACAACACCCAAACGTAAACGGAAAGCCACCCACACCACGAGTTTTCTAAATAAAATGGAAATGTTACCAATTTTTGATAACGACTATAGAACACAAGACGAAGAGTTAACCGCTAAAAACAAGGTTGCAAAGAAAGTTTACGAAGAGCCAACTGTATCAGCCAATAAAGTGCCCGAGTTCAATAGTGAAGAAGATGAAAACAAAGAAAATCCCATCGCTATAGTTAACAATGATAATGAATTTGATAGCGATAGCAATGTCAGTGTTTATAGAGATCCTTTGCTAATAAGAAATGAAATGTTGGAAGAAGACACTCATCTCACAGATTTTCCGAAAACACAGTTATCCCTTCAAACTGAATGTTCCAAGGAGATGTATAAATTATACAAGGAGAAGATTAATTTTGAAAGTCCCAAGAAGTTGGTGGTAAGAGTGCCATTAACCTCGTTAACGCAAGAATTTAAACGACTGCATTTAACCATGGAAGATCAGGAAAATAAAGATGAAATTGAAATTGAAACAACCAATAAAGAAAACCAGCAAGACTTATTTATAGAAGAATCAAACAAAGAAGAATATGTATGCGACGAAAATATAAAACAGCAAGAAGAATTACCTGTGGAACAGGAGCCTTCAATGGCGATAAACTCCTGTAGCAGTCAAAGTGATCTATTGGGTTTTTCGCAAAGCTCGGAAACATCATCACACCCTTCAATAGAAATGGTGAGATATGCTGAACCACCTTTACTTTCAGCTTCTTCAAAAATAACTGATTTCATAAATGACTTTCAAAATAATTGTATTGATTCATCGGAAATTGAAGATGCCTGTGATATGATACCCAGTCTAGGGCCTCAAATAACACAAGAATTAAGTGATGAAATACGGGACGTTGAGGATACATTAAATGGTATTCTAAGTGAAATGCATGACAAAGATATGTATACCCCTAGATCGGGAGAAACTGAAGAATTTTTTGCTCATTCCGTATACTCGCCTCTAACAGATTCTGCAACAACTCCTTCGCAAAGTTTTTATGCTGAAAGTCCTTGTACTATTAATAGTAATCCTATGTCGGTTAGTCCTTTTATACACCACAATATGGACTATAATGCCATGACACCACAAAGTAATCACAGTAGTAGCATGGGTCCCGGAAGCTGTTATATGGGTGGTGGGGGCAGTACTGGACCTCATGCAGGAGTTCTTAGTGAACATTATCCCAGCTATAATGAGAGTTTTGAAGAAAGTACCCAATCGGAGTTAATTGGTTTTCAAAATGACATACCGTGTTTTGAAAATATTGGAATAAGCACTTTAAACAATCCCAATGAACCATTAACAGTTAATCCATGTGTTTTGACTGAGGAGGAGGAAGCAACAGATAACGTTAATATTAATAGTGCAAATGAAAATTGTGTTATAAACCAGGTTGAGGTGGAAGATTCGAACGAAGACGTTGATTATGTAGATCTACCTAACCAGCCATCTGAGCAAGTGGAATCTTTAGAAGAAGTGTCAGTTACTAATTCGGAAATACAACCGCAACCAATAACTTATAATCCAACAAATTTTCAGCCAATTAACAGCACCACCAATATACAAATGCAGAGTTCCACAAATTCTTTAACACAGCCACATTACATTGTTACTAATACTAATCAGGGTCCAATAATTATAGCCAATCCGCAACTAAATCATGGTGGAGAGTCAATAGAGAGCCCTTTTAAACCTCACAGCAATAATTTACAATTTGTTACTTTGGGGCAGGCTATGAAGGCGAATCGGACATCCTCAAATCAATTAATTAATAGTAATCCTACCGAAATTAACTGGTCAACTTCGATTCCTACAACCCATAGTTATAACCAGCGACCAGTTATTACTACAGCCAATGGTCCTACAACAACCTATTATATTAATACTAATGGAGGTCTATATCAAGCCAATATACCTTCGACTCCTTTGCAAAACTCTTCCGTCAATACCATATTTGTACCACCCAACACCGCCCAGGCATTCAGTAAATCGAGTATGGATAACAACGACAACTATGTGCAGACCCTGCCACAGCCGCAACATACACAACCCACAACCAATAGACAATCTTCGCAATATATAATGCTGGTCAACAATTTGGGAGGCACACCTCAATACTATGCCACCACCCATGCTCAACTTAATCCAACGATAACAACCCCCCAAAATATACCCCAGCAAGCAGTTTTATTCCAGCCGGCTTCAGCGCAAAGTGTACGAAACCCTACAAATTCCACGACCGAAACCAATTCTACCGCGTTCCCAATAAAAAATACACATGTACCTATTGCCGCCCCTTCAGAAACCCCGACGGACTCCTCGAATAATCAAACAGTGCATCAAAGGATCAATCAACAATTACAGAAACAAATAAAACAACGGCAATTACATATTTTGCAACCTCGATCTCCAAATCTTACGCAAACAATCGCTCTGGTGTGTCGCTATTGTCACAAACGTCCAAAATTTACCAATAATGTAGACTACAGCAATCATATAATTAATACACATCCCGCCGAAAAACCCTTCAATTGTCCACACTGCCCCATGCATTTTAGTCGACGCAGTGAGCGGCAAAATCATGTGACACGAGCTCATGGTTCTCATTATCAATGTGCTCAATGTGGTTTGAGTTTTGGTGCTCAACGTACTTTAGATTTTCATTTACAAAAATACCATGCCAATCTGGGAAGATCTCACCAACATTTAAAGCAACAACAACAGCAAAACTCCACCTCTACGGCAGTACCAGCTACCTATCAGTTGTTACAGCACAATCACCAACAACGATTGGTTCGTGTTGAGGATGTTCATGTACAAGTAACTGGAAAAAATAAGAATAAACGTTCCATTGATCTGACATTGGAGAACAGTGTTGATATACAGGCTTCACAATCTATAAACGAAGTTGAAAATTTATCGCACACGACGGGAACTCCACAGCAACAAACTCGTAAATTATGTTGTCCCGATTGTGATGGTGATAATAATGACTGTTGTAGTTCGAATCAAAATCAAGATCAAAACGACAACAGCATCAATGAAATACAAACACCAACCAATAATCCACAACAATATGCAGGAAATGAAAGTGTGAATAATCATCTGCAACATCCTCAACATGTTACCATACCCTCACCAGAACAAACTGAACCAGATTCAACCACAACATTACGATACTTTCGTAAACGCCAATTATGCGATGTATCGCCATCCCAGCACTTTGCATCAGCTTCCCCATCATCATCATCCTCATCGTCGTCCACGTTCTCTCTTAACAATAATGCCGCCAACAATAATGGCGACAATGACAATAACAACATCAACCTAAACCGCAATAGTCCGGACAATGTTCTGACTGGTTGTGGTGGCAGCGGCGGCAGTGGTGGCAAACAAATTGTGATTGAACGTGCATTACGCGGCAGTCATAATTGTCTATTGTGCGAGGAATCATTTACAAATGAAATAGCTTTGCGCAAACATCACCACTTGGCACATGGTGCCGCCATACAAGCAACATTAACAAACGGCAGCAGTGCATCAACAACAACAACATCATCGTCATCAATGTCGTCGTCATTAGTGTGTACGATTTGCAAACGAGGTTTTCGTATGCGCAATGCTTTACAACGGCACATGGAAACGCATGATGCTGAGGGTCGGCCCTATGAGTGTAACATATGTCAAGTACGTTTCCCGCGACCCTCCCAGCTAACGTTGCACAAATTGACGGTGCATAAATTCGAAAAACCAATTCCGTGTGATGAGTGCGGCAAACAATTTGGCACTGAGAGTGCAATAAAGGCTCATGCAGACGAACATGTGGAAGCCAATGCAACAACATCAGAGGCATCAACATCGTCAGCATCACAGCAACAATTATCTTCTCGCATTTATATGGAAACAATGACAACAAACACAACATCAATATCAACCTCAACCTCAATAGCAAATGAACACAACAATATAAATATAAATTCACAATCTACAACATCCGGTGAAGAGTCAACGGTTTCAATCCCACTAACCAACAACAATCAAAATATACCTAATAATGTAACACAAAATACTAATGTCTCAGGACTCATTACATAG
- Protein Sequence
- MIHKFRRKCLKVQTQLRALYEEQQKFYESRQQQQKEKNVTVKEDVTIEDDEEETTSTPVSTVPVVEAQPQLQPTNLVVEIVKPPVMHKVNDLVNDNYSETQQAIVVDNTNTKSSVPFEANTGNTNDFIAPTIKTKTLLDNVETMPQKIETKTEANEPTPTSSAPGTVTATETAFIDKTFETHEHEHSTGTTQQLRLLKDEKKPLLKPAVLNSQSLPPLTLQQPLEQICDNDALEVPTNPSKKPCLDQEALLETHIIFKSSTKKEDLKLCLRNEQTMLENHDNSSGNLSPCAEGIKANKTFQLSKQETKHFSKDSALSKANSESLFITKAALKSYTISPATSECENRDHHQKPITNSVAAEEAKNNNDNNNNDHKNIYDNQEELNDNTCSSSTTATTPSSSPSIFRTPKRRNICKRKMIKYSNQNSRPGHCYKSNAKTAKIIATTTTAAKKARTILNYGGELYVKRKPRSRQNKHKLKRLTNATTTKTKTSSINSPSIDLRKKLDHKGVKINHKKSSDEMSSTVSTTSSNSPTSSCSPSSSAMSSTTSSPLRAIAPAVTDLVRNNRNAQENMTKTGCSSSSSSAAARADILSSNMTCIMWKTKAAMKANANDMTANANVLADNVDDGEPTSNIPEITSPYKASTTTGSTSFLLSSGLAVDKSSKTLNENQSISTSTSKSCSSSNNNNILMEEYCLTNKVMSSLAGNQVKDIEDESEKQKTPKCNLWPEEADQNQIEANTPKEKQNAIKLANKKEFMYIEGYKEQNIEEDKKEEQKPIILTPPAKIGSMKLIIQRKRGARFKCRRKEDDDEETNTKHDNHEPTTPKRKRKATHTTSFLNKMEMLPIFDNDYRTQDEELTAKNKVAKKVYEEPTVSANKVPEFNSEEDENKENPIAIVNNDNEFDSDSNVSVYRDPLLIRNEMLEEDTHLTDFPKTQLSLQTECSKEMYKLYKEKINFESPKKLVVRVPLTSLTQEFKRLHLTMEDQENKDEIEIETTNKENQQDLFIEESNKEEYVCDENIKQQEELPVEQEPSMAINSCSSQSDLLGFSQSSETSSHPSIEMVRYAEPPLLSASSKITDFINDFQNNCIDSSEIEDACDMIPSLGPQITQELSDEIRDVEDTLNGILSEMHDKDMYTPRSGETEEFFAHSVYSPLTDSATTPSQSFYAESPCTINSNPMSVSPFIHHNMDYNAMTPQSNHSSSMGPGSCYMGGGGSTGPHAGVLSEHYPSYNESFEESTQSELIGFQNDIPCFENIGISTLNNPNEPLTVNPCVLTEEEEATDNVNINSANENCVINQVEVEDSNEDVDYVDLPNQPSEQVESLEEVSVTNSEIQPQPITYNPTNFQPINSTTNIQMQSSTNSLTQPHYIVTNTNQGPIIIANPQLNHGGESIESPFKPHSNNLQFVTLGQAMKANRTSSNQLINSNPTEINWSTSIPTTHSYNQRPVITTANGPTTTYYINTNGGLYQANIPSTPLQNSSVNTIFVPPNTAQAFSKSSMDNNDNYVQTLPQPQHTQPTTNRQSSQYIMLVNNLGGTPQYYATTHAQLNPTITTPQNIPQQAVLFQPASAQSVRNPTNSTTETNSTAFPIKNTHVPIAAPSETPTDSSNNQTVHQRINQQLQKQIKQRQLHILQPRSPNLTQTIALVCRYCHKRPKFTNNVDYSNHIINTHPAEKPFNCPHCPMHFSRRSERQNHVTRAHGSHYQCAQCGLSFGAQRTLDFHLQKYHANLGRSHQHLKQQQQQNSTSTAVPATYQLLQHNHQQRLVRVEDVHVQVTGKNKNKRSIDLTLENSVDIQASQSINEVENLSHTTGTPQQQTRKLCCPDCDGDNNDCCSSNQNQDQNDNSINEIQTPTNNPQQYAGNESVNNHLQHPQHVTIPSPEQTEPDSTTTLRYFRKRQLCDVSPSQHFASASPSSSSSSSSTFSLNNNAANNNGDNDNNNINLNRNSPDNVLTGCGGSGGSGGKQIVIERALRGSHNCLLCEESFTNEIALRKHHHLAHGAAIQATLTNGSSASTTTTSSSSMSSSLVCTICKRGFRMRNALQRHMETHDAEGRPYECNICQVRFPRPSQLTLHKLTVHKFEKPIPCDECGKQFGTESAIKAHADEHVEANATTSEASTSSASQQQLSSRIYMETMTTNTTSISTSTSIANEHNNININSQSTTSGEESTVSIPLTNNNQNIPNNVTQNTNVSGLIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01237278;
- 90% Identity
- iTF_01237278;
- 80% Identity
- -