Pame025768.1
Basic Information
- Insect
- Pollenia amentaria
- Gene Symbol
- -
- Assembly
- GCA_943735935.1
- Location
- CALSEV010000443.1:224705-228662[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.044 5 9.0 1.8 1 23 370 393 370 393 0.93 2 12 6.3 7.2e+02 2.2 0.2 2 11 400 409 399 414 0.82 3 12 1.4 1.6e+02 4.3 0.3 2 13 426 437 425 441 0.85 4 12 2.4e-06 0.00028 22.4 1.1 1 23 455 477 455 477 0.99 5 12 0.0049 0.56 12.0 4.6 1 23 485 507 485 508 0.95 6 12 0.00017 0.019 16.6 3.0 2 23 515 537 514 537 0.95 7 12 0.039 4.4 9.2 0.3 1 20 564 583 564 585 0.92 8 12 0.00056 0.064 15.0 5.3 1 23 612 634 612 634 0.98 9 12 0.088 10 8.1 4.0 1 23 641 664 641 664 0.97 10 12 3.3e-05 0.0037 18.9 3.9 1 23 670 692 670 692 0.97 11 12 0.093 11 8.0 4.0 3 23 699 722 698 722 0.93 12 12 0.22 25 6.8 2.5 2 23 726 747 725 747 0.95
Sequence Information
- Coding Sequence
- ATGGATCAACTGGAACAATTGGAAGCATGTCGTATTTGTGTAACCTGTTTTCCTTTAAAAGATATGGATTTTATCAATATTTTTCAGCCAAATGAAGAATTTCAGCAAGAACTGGATTTCATACAGGGCGAAATTAACCAGTGGCAGTTGAAAATACAACCAGATGATGGTCTGCCACAACGCATCTGTGCAAATTGTTTTGCCAAATTTTGCAGTATTGAGGCATTTCGAAAAGAATGTGAATTAGCACAGGAAAAGCTGATAGAAACTTTACAGCAAGCTACTAATAATGAGGTGGAAGTACAACATGTTATAAAAAACAGCGAGAACTCCTTATCTTTTGTGGATAACTATGAAACTGGTGGTGAAGCGCTGGCGTCGGGAAAAAATATTTTGGTTTCTTCAGTAAATTTAACACAGTCCGATGTTTCTTTAAATGAATTCCCCGTATTCGATCAACACTTTTCCCAATTTGATAATCCCGTATTAATGGACGCTTCTTCCACTTTGCTCGATAGTAATATAATCCCAGCCGAAACTTCACAAGAACTAGGATTTTTACCGTCACAAAATTTATATACATTTGAGACTACCGAAGCACCCTCAACGGGAACCCTGCCATTAGATGAGACTGAAACTACTTCCATTATAAATGAAATGCTAGTGGATAAACATGGTAGTGAGGATGTTGCAATAAAACATGATGATCTTGAAGATATGTTACAGCACAGTATTATACCGACTACAACTAAATTAAGTCAACAAGGAACACGCCTTGAAGTAGAGCATCATACTAATGATGCGAATACCGAAACCGTGAAAATGGATCAGGATGTTAAGAATGAGAATATAAATAATTTTAACAGTAACTATGCCATTAAAGTAAAGAGTGAATTTCAAAATAACACAATATCATTTTTAAACCGCGAGGACACTAATTCCGACATTGAATGTGATGATACTGATATGAATGCCCGTTTGAAGGGCCTATCTTATGCTTGCCATTATTGTTTTTGCCCGGAAACTGGATCCATCGATCATTTGGTCTTCCCTAATGAGGATGCTTTGTCACAGCATTTTTTCGATATTCACGAACCAAATCGTCCCTACACTTGCCCTAAATGTCCGCAATCCTGTAAAACAAAATTGTTGCGTGATAATCATGTCCGACTAATACATAAAATCGTAGAAATTCAAACGTGTAATTATTGCCAGAAACGTTTGAAGGGCTCCACAGATGTTCATGAATACAATTGTCAATACGTGGGCGATTGGCAGTGCGAACAGTGCAAGGAGAAATTTACAAATACACCCCTCTACCGTTTTCGTTTGCATCAAGGTCAACATGAACGCACCAAGCATTTCAAGTGCCGTTTGTGTGAACGTTCTTTTGTAAGAAAGGCTAATTTCGAGGCTCATCAAAGGATACACAAGGCAGAAGCACAATACAATCACACATGCAACGTTTGCAAAGCCAGTTTTGCAGATGACTATGAGCTTAAACGTCACAAATACAAACATCATCAGGCAGAACCCCCTCTTAAATGTAAAATATGCCACAAAGGGTTTTCTTCAACTGTTTTCCTTCAACGTCACATTAATCAATTTCATCCAGAAAATGTAATTAACAACAATAACAATATTTGTAAAACCTCATCATCGTCATCCTCCACATTTTCTTCAGAACAACATATTTGTTTAAATTGTAATATGGATTTTAAAACTTTAGAAAAGTTGCAAGATCATTTACTATTGGGTCGTGACAGAAATGGCATTTGTTTGCATAGTTCGTTTAACAAAGAGGAACGTCGGAAGATTCAGCGTCAGGGTGTATTTCCTTGTTTTCATTGTCCCCGCCGCTTTCATTTGAGATCACAACTTGAGAAACATTTAAATACTCACGACGCACGCTTGCGACCATTTCAGTGCGACCAGTGTGTCACACGATGTCGCACGACCTGCGAACTAAAACAGCATGTAAATGTGGCTCACTTGAATATCAAGGCGTTTTCGTGCGATAAATGTGGTAAATGTTTTGGTTATAAAAAGGATCTAAGAGATCATATGCTTTTTCATGCAGAAATCAATGTCCACTGCACCGAAGATGGTTGTGACTATGTGTGTAAAAATGAAAAGGCTTTAAATGATCATATACGCCACAAACATCGTTTATTATCTTGTGAATATTGCCATGATCAGTTCACACGACAAAAATTAACTGCTCACCTACGTAAAATACATCGCGCCGAAATAGACGTTGAATTAGCCGGCGAATCCGATAACTTTTATAAATCTCAATTACTTAATAATAACAATGATATTACACAAATCTCGTTTAATTTACTTAATACTCAACAAGACGATCAGCAAATATCAGAAACGTCATCCCAACTGCCACCCTCATCTGTGTCATCTCAAACTTTGACTGCTGCTATAAAAAGCGTTCACCTGCAAGCGCAAACATCCGGTGCATCTGCAATTCCCACATCATCTTCGTCTGTATCCACTACTAAGTCTTCATTACTAACAACTCCCATAACATCAATTTCTACATCATCATTACCATCTCCTTCATTATCTTCATGTTTAACAAGCAATGAAAAAGGTACTAATTTAATTTCTAACTCTACTTCCATTTCTTCACACAATATGATCGGTGATGTTGATCATCATCATGATCAATTATGTGCCATGTTTGTGGCCAGTGATGCTCATGATTCTAATGGCACAACATTAGCTTTAAATGGTTTGGTCTCAACTGAACATAATTTGAATTTAGTAACTAATGAAACTAACAATATGTTTGTAGTGCCCTCCACGTCATCTCCTGCAAATGACAACCAACTAGATCAGTTTTTTATGGCCTCTTTAATTGATACTGAACAAGAAATTATAGTTACATAG
- Protein Sequence
- MDQLEQLEACRICVTCFPLKDMDFINIFQPNEEFQQELDFIQGEINQWQLKIQPDDGLPQRICANCFAKFCSIEAFRKECELAQEKLIETLQQATNNEVEVQHVIKNSENSLSFVDNYETGGEALASGKNILVSSVNLTQSDVSLNEFPVFDQHFSQFDNPVLMDASSTLLDSNIIPAETSQELGFLPSQNLYTFETTEAPSTGTLPLDETETTSIINEMLVDKHGSEDVAIKHDDLEDMLQHSIIPTTTKLSQQGTRLEVEHHTNDANTETVKMDQDVKNENINNFNSNYAIKVKSEFQNNTISFLNREDTNSDIECDDTDMNARLKGLSYACHYCFCPETGSIDHLVFPNEDALSQHFFDIHEPNRPYTCPKCPQSCKTKLLRDNHVRLIHKIVEIQTCNYCQKRLKGSTDVHEYNCQYVGDWQCEQCKEKFTNTPLYRFRLHQGQHERTKHFKCRLCERSFVRKANFEAHQRIHKAEAQYNHTCNVCKASFADDYELKRHKYKHHQAEPPLKCKICHKGFSSTVFLQRHINQFHPENVINNNNNICKTSSSSSSTFSSEQHICLNCNMDFKTLEKLQDHLLLGRDRNGICLHSSFNKEERRKIQRQGVFPCFHCPRRFHLRSQLEKHLNTHDARLRPFQCDQCVTRCRTTCELKQHVNVAHLNIKAFSCDKCGKCFGYKKDLRDHMLFHAEINVHCTEDGCDYVCKNEKALNDHIRHKHRLLSCEYCHDQFTRQKLTAHLRKIHRAEIDVELAGESDNFYKSQLLNNNNDITQISFNLLNTQQDDQQISETSSQLPPSSVSSQTLTAAIKSVHLQAQTSGASAIPTSSSSVSTTKSSLLTTPITSISTSSLPSPSLSSCLTSNEKGTNLISNSTSISSHNMIGDVDHHHDQLCAMFVASDAHDSNGTTLALNGLVSTEHNLNLVTNETNNMFVVPSTSSPANDNQLDQFFMASLIDTEQEIIVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01238165;
- 90% Identity
- -
- 80% Identity
- -